PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g24120.3.p | ||||||||
Common Name | BRADI_2g24120, LOC100836332 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bZIP | ||||||||
Protein Properties | Length: 248aa MW: 26358.3 Da PI: 6.1369 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 43.7 | 6e-14 | 165 | 217 | 3 | 55 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 + +r++r++kNRe+A rsR+RK+a+i+eLe v +Le+e +L e ee +++ Bradi2g24120.3.p 165 ATQRQKRMIKNRESAARSRERKQAYIAELEAQVTQLEEEHAELLREQEEQNEK 217 679*************************************9988776655544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.3E-10 | 162 | 228 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.9E-12 | 165 | 224 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.944 | 165 | 229 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 2.15E-18 | 167 | 214 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.8E-13 | 168 | 224 | No hit | No description |
SuperFamily | SSF57959 | 5.55E-11 | 168 | 215 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 170 | 185 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MASSRVMAAS SQPPRSGSSD LARFRSASGI GSMNMDDILR NIYGETPPAG AGGASGEPSP 60 APEAAARRTA EEVWKEISAT GGLSAPVPAP APAGAGGGDG GGASVMTLED FLAREEDARV 120 TAVEGNMEVG FPDGAEGVVG GRRRGGGGGG RGRKRAPMDP MDRAATQRQK RMIKNRESAA 180 RSRERKQAYI AELEAQVTQL EEEHAELLRE QEEQNEKRLN ELKEQAFQVV IRKKPSQDLR 240 RTNSMEW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 147 | GGRRRGGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00648 | PBM | Transfer from LOC_Os05g36160 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g24120.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT224373 | 0.0 | KT224373.1 Triticum aestivum cultivar RAC875 bZIP2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003568373.1 | 1e-175 | bZIP transcription factor 12 | ||||
Swissprot | Q0JHF1 | 7e-67 | BZP12_ORYSJ; bZIP transcription factor 12 | ||||
TrEMBL | A0A0Q3G420 | 1e-174 | A0A0Q3G420_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G24120.3 | 1e-170 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2665 | 37 | 86 | Representative plant | OGRP9845 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44080.1 | 2e-17 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g24120.3.p |
Entrez Gene | 100836332 |
Publications ? help Back to Top | |||
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