PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g24040.1.p

Common Name

BRADI_2g24040, LOC100833176

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 328aa MW: 34410.3 Da PI: 7.673

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g24040.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120	8.7e-38	38	93	6	61
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Bradi2g24040.1.p 38 PNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 93 68***************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	22	83	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.2E-32	38	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.854	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MLSSHCENML AYAAAAAGRR ASVLVDPRRY RPNVEVAPNC PRCDSPNTKF CYYNNYSLSQ 60 PRYFCKGCRR YWTKGGSLRN VPVGGGCRKN RRGSKSSSSA RPMADDTAAA ARDHGPAPAA 120 FSHRFHGPVR PDMLLEGMVG NPPAQLGQPA PSSANKPAAA ADGSMIDLAL LYSKFLSHQP 180 ANDVRESVDT SSSGSSSATS PGVQPGSGPA QAQAQHGFGR LSSPATASTE QSETTTMLQC 240 ADVRAQALGE LAFSVDQSCY DSLGLPTDGG DLILRSTWDQ GAKYEPFDSL PVPEDAMSLH 300 GGVPAGGDDV WSKVLGSQGL EAALCRP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g24040.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM084358	1e-103	AM084358.1 Hordeum vulgare subsp. vulgare dof10 gene for dof zinc finger protein 10, exon 1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003568362.1	0.0	dof zinc finger protein DOF5.1
TrEMBL	I1HJ04	0.0	I1HJ04_BRADI; Uncharacterized protein
STRING	BRADI2G24040.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2659	36	83
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	1e-27	Dof family protein

Link Out ? help Back to Top
Phytozome	Bradi2g24040.1.p
Entrez Gene	100833176