PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g22241.1.p
Common NameBRADI_2g22241, LOC100842121
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 288aa    MW: 31103.5 Da    PI: 5.2032
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g22241.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.31.8e-24103163158
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                       ++Dgy WrKYGqKe+ +s +pr Y+rC+++   gCp++++v++s++dp++ +itY g+H++
  Bradi2g22241.1.p 103 VEDGYIWRKYGQKEILNSSHPRLYFRCSYKhdsGCPATRQVQHSDHDPSLYVITYFGHHTC 163
                       58***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-2595163IPR003657WRKY domain
PROSITE profilePS5081119.87598166IPR003657WRKY domain
SuperFamilySSF1182908.24E-2499163IPR003657WRKY domain
SMARTSM007742.9E-37103165IPR003657WRKY domain
PfamPF031062.9E-24104163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAALVTPASV VSELMARGRQ SAAVLAALLQ DASPPGAPHE LAAEILRCWD RALAALHAAE  60
IPPTAGSDGP KRKPGAATDT RPKRRARVSG RETAARVETK RTVEDGYIWR KYGQKEILNS  120
SHPRLYFRCS YKHDSGCPAT RQVQHSDHDP SLYVITYFGH HTCCVGGDTV TTTTAAEEEL  180
LKTPEPKPFV IDFGSGSGSS GGSPPWLSSS SSEEEDDGRS CKQVESTSSE LQHPAAEQSS  240
SADELSCSSP AWDPLLPVCS SDWDYLGETS FDYITELINR YEIAMFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-22101163668OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g22241.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566135.10.0probable WRKY transcription factor 54
TrEMBLA0A0Q3QX500.0A0A0Q3QX50_BRADI; Uncharacterized protein
STRINGEMT198783e-91(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.13e-23WRKY DNA-binding protein 54