PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g21407.5.p | ||||||||
Common Name | BRADI_2g21407 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | G2-like | ||||||||
Protein Properties | Length: 185aa MW: 20790.4 Da PI: 5.3422 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 31.5 | 3.8e-10 | 1 | 20 | 36 | 55 |
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+v+g+t++hvkSHLQkYRl Bradi2g21407.5.p 1 MGVPGITIYHVKSHLQKYRL 20 99*****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-9 | 1 | 21 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 2.7E-24 | 53 | 98 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MGVPGITIYH VKSHLQKYRL AKYIPESPAE GSKDEKKDSS DSLSNTDSAP GLQINEALKM 60 QMEVQKRLHE QLEVQRQLQL RIEAQGKYLQ MIIEEQQKLG DSLEGSEERK LSHSPPSLDD 120 YPDSMHPSPK KPRMEDLSPD LARGVTQPRF ESHLIGPWDQ ELCGKNISDP AFQVDEFKAN 180 PGLS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g21407.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK355177 | 0.0 | AK355177.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1016P09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003568204.1 | 1e-132 | myb family transcription factor PHL7 isoform X4 | ||||
Refseq | XP_010231226.1 | 1e-131 | myb family transcription factor PHL7 isoform X1 | ||||
Swissprot | Q9SJW0 | 3e-46 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A0Q3K4E2 | 1e-131 | A0A0Q3K4E2_BRADI; Uncharacterized protein | ||||
TrEMBL | A0A2K2D9R4 | 1e-132 | A0A2K2D9R4_BRADI; Uncharacterized protein | ||||
TrEMBL | I1HI63 | 1e-131 | I1HI63_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G21407.1 | 1e-129 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.2 | 6e-28 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g21407.5.p |