PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g21407.3.p
Common NameBRADI_2g21407
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 285aa    MW: 31628 Da    PI: 7.01
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g21407.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.51.3e-3266120155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       k+rlrWt++LH+rFv+a++qLGG+++AtPk +l +m+v+g+t++hvkSHLQkYRl
  Bradi2g21407.3.p  66 KQRLRWTSDLHNRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRL 120
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.74263123IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.3E-3164121IPR009057Homeodomain-like
SuperFamilySSF466891.11E-1665120IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-2566121IPR006447Myb domain, plants
PfamPF002493.0E-768119IPR001005SANT/Myb domain
PfamPF143795.7E-24153198IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSLLLALLMC MTFSYNCCSI LMMYHAKKFS VPFAPQRAQN SEHVSNIGAF GGSNISNPAN  60
PVGSGKQRLR WTSDLHNRFV DAIAQLGGPD RATPKGVLTV MGVPGITIYH VKSHLQKYRL  120
AKYIPESPAE GSKDEKKDSS DSLSNTDSAP GLQINEALKM QMEVQKRLHE QLEVQRQLQL  180
RIEAQGKYLQ MIIEEQQKLG DSLEGSEERK LSHSPPSLDD YPDSMHPSPK KPRMEDLSPD  240
LARGVTQPRF ESHLIGPWDQ ELCGKNISDP AFQVDEFKAN PGLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-2365123159Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-2365123159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-2365123159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-2365123159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-2365123159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-2365123159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-2365123159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-2365123159Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g21407.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3551770.0AK355177.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1016P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024315223.10.0myb family transcription factor PHL7 isoform X2
SwissprotQ9SJW01e-70PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0Q3K4E20.0A0A0Q3K4E2_BRADI; Uncharacterized protein
STRINGBRADI2G21407.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79133343
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.19e-52G2-like family protein