PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g21255.1.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 179aa MW: 20604.7 Da PI: 8.2856

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g21255.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.6	4e-08	15	53	52	90
FAR1 52 rrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++++++ r+ C+a +++ +++dg w++ + ++ HnH+l+ Bradi2g21255.1.p 15 KENTKTIRCACTALIRLLRSDDGGWYICEHRETHNHPLS 53 6788999******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-5	15	53	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MHAGDCLWLR GKPVKENTKT IRCACTALIR LLRSDDGGWY ICEHRETHNH PLSTTCGEKL 60 HWQSHRHIDR YTKELIKQLR ENNVSLGKVY SIIGSFFGSM DQIPFMKRSL KTLCGKISQE 120 QSDNDAVKTM DVFSKMLEAD PDFKYTAQVD DESRIKTLMW TSGRSMYQYI CFGDVLMV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g21255.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014753620.1	2e-98	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_024313565.1	2e-98	putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A0Q3IZ04	1e-132	A0A0Q3IZ04_BRADI; Uncharacterized protein
STRING	BRADI2G07910.1	2e-94	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	4e-12	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Bradi2g21255.1.p