PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g20347.1.p
Common NameBRADI_2g20347, LOC100845078
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 378aa    MW: 41612.1 Da    PI: 8.1104
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g20347.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.94.9e-1488126341
               TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                       +k+C CkkskClk+YC Cfa g +Cse+C C  C+Nk++
  Bradi2g20347.1.p  88 CKHCACKKSKCLKLYCPCFAGGGYCSEKCGCVPCFNKSD 126
                       89**********************************986 PP
2TCR49.49.1e-16173209339
               TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                       ++gCnCkks+ClkkYC+C+++g+ Cs  C+CedCkN 
  Bradi2g20347.1.p 173 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCEDCKNP 209
                       589*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014471.23E-52232No hitNo description
SMARTSM011143.4E-1486127IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163430.49587211IPR005172CRC domain
PfamPF036385.5E-1089124IPR005172CRC domain
SMARTSM011146.5E-15171212IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.7E-11174208IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEATPISMKP PSPAPAPAPA QPPPPPPPPP PPLIEAVPLA IVEPLPSPSP PPAVAGGLEA  60
DPSAANQLAL ATTPKRQRVE EAADGNGCKH CACKKSKCLK LYCPCFAGGG YCSEKCGCVP  120
CFNKSDYAET VQTTRKVLLS RQKRMSLKIN RRSEANAEAM EDAHNSSSST PPRRGCNCKK  180
SSCLKKYCDC YQDGTGCSLF CRCEDCKNPY GKNEGIMTEE TKRFIYTGAD LDNSEDDHEF  240
VVERSPRMQS PISKESSLQH TPSRNKASSR DTHLFPQGLS QWQPRWQSSK RQINDRAIDD  300
SGENRNLNND WQLAKHQEDS YSISRCIQIL NSMAELSQVE KSVAPDVFLQ PGNREIFVSL  360
GIDVRALWLR RKIQHLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-119120814120Protein lin-54 homolog
5fd3_B1e-119120814120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g20347.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568148.10.0protein tesmin/TSO1-like CXC 3
TrEMBLI1HHT80.0I1HHT8_BRADI; Uncharacterized protein
STRINGBRADI2G20347.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101592937
Representative plantOGRP1200246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.12e-45Tesmin/TSO1-like CXC domain-containing protein