PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g19867.1.p
Common NameBRADI_2g19867
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 692aa    MW: 75224.5 Da    PI: 7.4635
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g19867.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.4e-24134235199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae++      +++   s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   + 
  Bradi2g19867.1.p 134 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyEQVR-PSQELIAKDLHGTQWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RG 223
                       99****************************975554.4569************************************************..44 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                        ++el+++++r+
  Bradi2g19867.1.p 224 CDGELRLGIRRA 235
                       99999****996 PP
2Auxin_resp93.63.2e-31283355982
        Auxin_resp   9 svFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                        vF  +Y  r+++seF+v+++k++k+l++++s+GmRfk+++e+ed++er+ +G+++gvs++dp+rWp+SkWr+L
  Bradi2g19867.1.p 283 HVFLLLYLTRSGASEFIVPYWKFSKSLNHPLSIGMRFKLSYESEDANERS-TGMISGVSEVDPIRWPGSKWRCL 355
                       68999********************************************9.9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.32E-44125259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-39130236IPR015300DNA-binding pseudobarrel domain
CDDcd100177.76E-23132234No hitNo description
PfamPF023621.6E-22134235IPR003340B3 DNA binding domain
SMARTSM010193.0E-22134236IPR003340B3 DNA binding domain
PROSITE profilePS5086312.971134236IPR003340B3 DNA binding domain
PfamPF065071.4E-25283355IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MGIDLNTVEE DGDAAAASAA AGVCGELWHA CAGPGVSLPR QGSALVYLPQ GHLASGGGGG  60
GEVAGAAPPV PPHVACRVLD VELCADAATD EVYARLALVA VCEMSRQNLG GTAWGEEDME  120
FGSGEKKPRM PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYEQVRP SQELIAKDLH  180
GTQWRFRHIY RGQPRRHLLT TGWSSFVNKK KLVSGDAVLF LRGCDGELRL GIRRAVQLRN  240
EDLFKAVNSS DSRQRTLSAV ASSFRNRSTF HVCFDPSSWF VSHVFLLLYL TRSGASEFIV  300
PYWKFSKSLN HPLSIGMRFK LSYESEDANE RSTGMISGVS EVDPIRWPGS KWRCLLVRWD  360
GNTDCNHQHR ISPWEIERVG GMNSVTHSLS ASNSKRTKLS FPESNLDAPV IDGNGYPDSM  420
EIKKFRRVLQ GQELMGSKTR GVACSQSPDV ANIRTSDNRW FSNVQEQASE FTYQHLGFGE  480
SVGFPEVLQG QEMSQAVPFF KGTTFDTRAT NGRVGSFSHV RQSAAPTGLP AEAQGYSLPQ  540
FALSSAAKVS SPSSVLMFNQ ATVPQLELEG RTHHHGAYLS QCSPLEMASK TDAWLRVQRP  600
VPRETGGHRF DIGRASTPAN SGLATRDSGR SNCRLFGFSL TEKILGAGED VKGGNSNEEA  660
DRADPRLLEL FGHSHPSPSA LHALVAAPLG M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-892238918362Auxin response factor 1
4ldy_B2e-892238918362Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g19867.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314990.10.0auxin response factor 14 isoform X1
SwissprotQ0DGS10.0ARFN_ORYSJ; Auxin response factor 14
TrEMBLA0A0Q3MMF40.0A0A0Q3MMF4_BRADI; Auxin response factor
STRINGBRADI2G19867.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Representative plantOGRP1425444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-144ARF family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]