PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g19820.1.p
Common NameBRADI_2g19820, LOC100832329
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family VOZ
Protein Properties Length: 583aa    MW: 63718.4 Da    PI: 5.0905
Description VOZ family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g19820.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1VOZ418.11.6e-1282664831217
               VOZ   1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwna 92 
                       p+ps++lgpkcalwdc rp++gse++qdyc+ +ha laln+ gl gt+pv+rp+gidlkdg+lf+al akvqgk+vgip+cegaat+kspwna
  Bradi2g19820.1.p 266 PSPSQYLGPKCALWDCGRPVRGSEECQDYCNPYHAGLALNDdGLQGTRPVMRPRGIDLKDGPLFDALCAKVQGKNVGIPVCEGAATSKSPWNA 358
                       89**************************************9799************************************************* PP

               VOZ  93 aelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrl 185
                       +elfdlsllege++rewlffd+prrafesgnrkqrslpdy grgwhesrkqvmk+fgg+k+syymdpqpss++ewhl+eyein+++alalyrl
  Bradi2g19820.1.p 359 PELFDLSLLEGESLREWLFFDRPRRAFESGNRKQRSLPDYGGRGWHESRKQVMKDFGGQKKSYYMDPQPSSNYEWHLFEYEINDSNALALYRL 451
                       ********************************************************************************************* PP

               VOZ 186 elklvdekksakgkvskdsladlqkklgrlta 217
                       e+k++d+k+s+k+k++++sl+++q+++++l+a
  Bradi2g19820.1.p 452 EFKSSDAKRSVKSKLASSSLNEIQQQMVKLSA 483
                       ******************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MAGDPTGGAG AGAGGGSGTG KGPRSSSRQF RDRAKTRVDD LQEIFSGLQS ARKESRSADA  60
AVLEEQVHQM LREWRAELNV ASPASSLQNS QGNNRAVSDP PSETLRMLQL AVEEEDDATS  120
KLMIPRLPLV MQPSRQSHGL GQNDQNLNPD LQVQGSPVAG GATAPQQSLG QGMQGDCAGE  180
VSDVANALFH EQMYYIDHEL SIDDFLHGSN PDSLSNLQGI GQLEHQQFNL PLDLELPNSY  240
IDANNSVQNT GDVLFHMSDL LTTMCPSPSQ YLGPKCALWD CGRPVRGSEE CQDYCNPYHA  300
GLALNDDGLQ GTRPVMRPRG IDLKDGPLFD ALCAKVQGKN VGIPVCEGAA TSKSPWNAPE  360
LFDLSLLEGE SLREWLFFDR PRRAFESGNR KQRSLPDYGG RGWHESRKQV MKDFGGQKKS  420
YYMDPQPSSN YEWHLFEYEI NDSNALALYR LEFKSSDAKR SVKSKLASSS LNEIQQQMVK  480
LSADSPVDNK RAARSKTKAN QKDSNANTYP TRNAPNQASA SNAYETVSLN IPNQANTSNA  540
SQAVSQVDEM AFLNENVMYG PHLPYGYPAE KSHFPWNPSD GA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g19820.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3762940.0AK376294.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3120B09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568104.10.0transcription factor VOZ1
TrEMBLI1HHM20.0I1HHM2_BRADI; Uncharacterized protein
STRINGBRADI2G19820.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23433888
Representative plantOGRP23271335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28520.21e-143vascular plant one zinc finger protein