PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g19480.2.p | ||||||||
Common Name | BRADI_2g19480, LOC100826121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GATA | ||||||||
Protein Properties | Length: 375aa MW: 38842.5 Da PI: 6.6189 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.3 | 4.5e-18 | 253 | 287 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Bradi2g19480.2.p 253 CLHCETDKTPQWRTGPLGPKTLCNACGVRYKSGRL 287 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-14 | 247 | 284 | IPR013088 | Zinc finger, NHR/GATA-type |
SMART | SM00401 | 4.0E-17 | 247 | 297 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.413 | 247 | 283 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.5E-15 | 249 | 310 | No hit | No description |
CDD | cd00202 | 1.44E-13 | 252 | 299 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 253 | 278 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 7.4E-16 | 253 | 287 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MEAAAAECAA GGAREKKDAG EIFLVDDLLD LPCDEEEGDE AAAAAEGLDG DCGGGGCGEA 60 GNASGDSSTV TAVDSGNNSL SGLADGDFSG GLCEPYDQLA ELEWVSNYMG DDNLPTEDLR 120 KLQLISGFPS SQLPAAAPRA PAPKLAACAG AGAGAGGALH SEPALVPVPG KARSKRSRVA 180 PCNWSSRLLV LPPAPASPPS PASAVISPSE SGTAFPPFPA KKPAKAAKKK DPLPAAAAPM 240 TAAAMAAAEG RRCLHCETDK TPQWRTGPLG PKTLCNACGV RYKSGRLVPE YRPAASPTFE 300 ASRHSNSHRK VVELRRQKEP PQQQQHLHHH GHQPQPHPGL QVHVPSPLLF DGPLIAGADE 360 FLLRNRIGHH HSYR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g19480.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566028.1 | 0.0 | GATA transcription factor 12 | ||||
TrEMBL | I1HHH6 | 0.0 | I1HHH6_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G19480.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 8e-41 | GATA transcription factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g19480.2.p |
Entrez Gene | 100826121 |