PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g16610.6.p
Common NameBRADI_2g16610, LOC100823758
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 731aa    MW: 79556.1 Da    PI: 8.0339
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g16610.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.31.7e-24175276199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae++      + +++ s++l  +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + 
  Bradi2g16610.6.p 175 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELAAKDLHGTEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RG 264
                       99****************************963.3445679************************************************..34 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       +++el+++v+r+
  Bradi2g16610.6.p 265 DDGELRLGVRRA 276
                       89999***9996 PP
2Auxin_resp110.32e-36301381182
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                       +aha++tk +F+++YnPr s+seF+v+++k+ k+l++++svG Rfkm++e+ed++err++G+++g+ d+dp  W++SkW++L
  Bradi2g16610.6.p 301 VAHAVATKGMFRIYYNPRLSQSEFIVPYWKFTKSLSQPFSVGLRFKMRYESEDAAERRYTGIITGTGDADP-MWRGSKWKCL 381
                       79*********************************************************************.9********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-40168278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.37E-43169286IPR015300DNA-binding pseudobarrel domain
CDDcd100175.13E-22173275No hitNo description
PROSITE profilePS5086313.38175277IPR003340B3 DNA binding domain
PfamPF023622.5E-22175276IPR003340B3 DNA binding domain
SMARTSM010192.0E-22175277IPR003340B3 DNA binding domain
PfamPF065074.0E-31301381IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MAGIDLNTVE EDEEESAAAA AGTGGDCSSS LHSQGSSAAT ASASASATPP PPPPPRQQAW  60
PPSAVCLELW HACAGPVAPM PRKGSVVVYF PQGHLEQLGG DAAAANAPVP PHVFCRVVDV  120
SLHADASTDE VYAQLSLLPE NEEAVRRKRE GAEEGSGGED GETGKQRFSR MPHMFCKTLT  180
ASDTSTHGGF SVPRRAAEDC FPPLDYSQQR PSQELAAKDL HGTEWKFRHI YRGQPRRHLL  240
TTGWSAFVNK KKLVSGDAVL FLRGDDGELR LGVRRAAQLK TGSAFPGLYS QCSNLGTLAN  300
VAHAVATKGM FRIYYNPRLS QSEFIVPYWK FTKSLSQPFS VGLRFKMRYE SEDAAERRYT  360
GIITGTGDAD PMWRGSKWKC LLVRWDDDVE CRRPNRVSPW EIELTSSASG SHLATPASKR  420
LKPCLSHVNP EYMVPHGGGR PDFVESAQFR KVLQGQELLG YRTHDGTAVA TSRPCEARNS  480
QYIDERSCSN DVGNSVLGIP RLGARTPYGN PGFPYHCSGF RESQRFQKVL QGQEVFHPYR  540
GSLVDARIRS SGIHQQDGPY APGAANKWHS QLHGCAFRGP PAPVLPSQSA SSPPSVLMFQ  600
QANSKVSRFE FGHGHLDMNE DDRHARFDST EGVGRSAQTL SLRPHLAAEV MDGHVAVENK  660
SVGTNSCKIF GISLAEKVRA RDEMGCGDAN YPSSVQSLKQ QVPKSLGSSC ATVHEQRPVV  720
GRAIDVQQWI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1156441118361Auxin response factor 1
4ldw_A1e-1156441118361Auxin response factor 1
4ldw_B1e-1156441118361Auxin response factor 1
4ldx_A1e-1156441118361Auxin response factor 1
4ldx_B1e-1156441118361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g16610.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567902.10.0auxin response factor 15
RefseqXP_014754927.10.0auxin response factor 15
SwissprotQ8S9850.0ARFO_ORYSJ; Auxin response factor 15
TrEMBLI1HGF40.0I1HGF4_BRADI; Auxin response factor
STRINGBRADI2G16610.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-161ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]