PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g13051.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 546aa    MW: 60352.4 Da    PI: 7.6653
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g13051.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.46.1e-10484530250
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktek 50 
                       fY++YA+++GF +r+ + +    ++ +++++f C ++g+++e+ ++t++
  Bradi2g13051.1.p 484 FYKSYAHHAGFGIRNGQRRLV--DDVVIWKRFLCARQGYKSEKGTNTTH 530
                       ****************98887..999****************9988433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF513951.18E-1144344No hitNo description
Gene3DG3DSA:3.20.20.701.7E-1345344IPR013785Aldolase-type TIM barrel
CDDcd0293306343No hitNo description
PfamPF007242.1E-847342IPR001155NADH:flavin oxidoreductase/NADH oxidase, N-terminal
PfamPF031013.0E-7484528IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0005622Cellular Componentintracellular
GO:0003959Molecular FunctionNADPH dehydrogenase activity
GO:0010181Molecular FunctionFMN binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MEPLTPLLTP YRMGEFNLAH RVVLAPLTRC RSYGNVPQPH NVLYYAQRAA EGGLLIAEAN  60
AVSETARGYP NVPGLWSQEQ VEAWKTVVDA VHAKGGVFFC QIWHTGRVSP TEFQPNGGAP  120
ISSTDKQVKP AVSHDGTVLE FAAPRRLETE EIPHVVNDFR IAARNAIKAG FDGVEIHAAN  180
GYLIDQFMKD GVNDRTDEYG GSLENRCRFA AEVIAAVADE VGPSRVGVRL SPFADYVDCI  240
DSDPEALALH VIRIMNGLGV LYCHVIEPRM CVNENDGRLI IPHRLMPFRE AFDGTFMVNG  300
GYDREEGDKA VGNGYADLIA YGRLFLANPD LPERFRKNAA LNKSCSTRRR PPARDAGFVR  360
ASTAGKRCAY LAWLRATERH GNLCCHLLSL SLPRLCRRTQ LTIYDTLSAL QIMEASNGST  420
MPAHAFGDYQ SHIDSSLNNN DGFSTPKRKT STPICCSTFV PECDDELKPV VGMTFDDVES  480
VETFYKSYAH HAGFGIRNGQ RRLVDDVVIW KRFLCARQGY KSEKGTNTTH PLNTGKRTVD  540
PSKKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1vji_A1e-16053431034712-oxophytodienoate reductase (OPR1)
2q3r_A1e-16053431034712-oxophytodienoate reductase 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative oxophytodienoate reductase that may be involved in the biosynthesis or metabolism of oxylipin signaling molecules. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g13051.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565762.10.0putative 12-oxophytodienoate reductase 11
SwissprotB9FSC81e-172OPR11_ORYSJ; Putative 12-oxophytodienoate reductase 11
TrEMBLA0A0Q3K0S80.0A0A0Q3K0S8_BRADI; Uncharacterized protein
STRINGBRADI2G13050.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.17e-09FAR1-related sequence 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]