PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g08600.1.p

Common Name

BRADI_2g08600, LOC104582530

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Nin-like

Protein Properties

Length: 283aa MW: 30091 Da PI: 8.9772

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g08600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	73.5	2.6e-23	41	88	4	51
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rki s Bradi2g08600.1.p 41 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRTHGIVRWPYRKIVS 88 6899*****************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.517	25	109	IPR003035	RWP-RK domain
Pfam	PF02042	2.3E-21	42	87	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MQKRPMAADA QAQQLPLEQA AAAVQAPVAP APAQPKPTRV SLSYEEISKL FSLPIAEAAS 60 ILGVCTSVLK RICRTHGIVR WPYRKIVSGK TGDDVKNAER EKAKELLELS KIAKQKASPG 120 GLQGVPKSQQ GSTKAGPSLA HVSQAKDIPT YMDDFKNGFP SSGLSCETMK WWGASSHTET 180 ASAKGDSREA PESTNEASKG MTDDELDWGA DEAEADTDGV VTSEPSAQLC SLRRKAAGDG 240 RRLLNGDTGR GQGFCRLNKR QKIALAQVFG ASLPEQWSSK LA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g08600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010230688.1	0.0	uncharacterized protein LOC104582530
TrEMBL	A0A0Q3ICD5	0.0	A0A0Q3ICD5_BRADI; Uncharacterized protein
STRING	BRADI2G08600.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6705	32	42
Representative plant	OGRP8668	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	3e-10	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Bradi2g08600.1.p
Entrez Gene	104582530