PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g08287.5.p
Common NameBRADI_2g08287
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 348aa    MW: 37347.3 Da    PI: 4.6097
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g08287.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like68.41.2e-21211261151
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvk.gLtlehvkSHLQ 51 
                       k +++WtpeLH+rFv+aveqL G++kA+P++ilelm+ + +Lt+++++SHLQ
  Bradi2g08287.5.p 211 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGNEySLTRHNIASHLQ 261
                       5689*****************.**************87658*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.425208268IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-20209261IPR009057Homeodomain-like
SuperFamilySSF466894.12E-13210262IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-21211261IPR006447Myb domain, plants
PfamPF002491.1E-6214261IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MLEVASLRSP KADQVFGLGL GGDHSHVGLG FPESGGVDDD DFLLDFIDFS TCDMPFFHVD  60
GDILPDLEVD SADLLALDFA SSSSPDEPSL EDGRWGSAVD DEAVTKAMEV GVEAELGGDS  120
MDMELPRDEN HKDEKLEVLL EDEKDEKKHN NNVVAGDEAV SSAVTSTEDS AAAAASDNKS  180
SSASAEGQSK RTSTKTPSAA VAGKSSHGRR KVKVDWTPEL HRRFVQAVEQ LGIDKAVPSR  240
ILELMGNEYS LTRHNIASHL QAGDETVKSE STGHMQVVPD PMHARLGCKM HAWMDREILG  300
LGLGRGGDIF HCPNRAKGTR QANKLAGLWA AGHELSQRRP RAMSPPD*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g08287.5.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519492e-72JF951949.1 Triticum aestivum clone TaMYB66 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565554.10.0probable transcription factor GLK2 isoform X1
SwissprotQ5NAN52e-57GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLA0A0Q3IC670.0A0A0Q3IC67_BRADI; Uncharacterized protein
STRINGBRADI2G08287.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.19e-24GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]