PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g08287.1.p | ||||||||
Common Name | BRADI_2g08287, LOC100821188 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | G2-like | ||||||||
Protein Properties | Length: 523aa MW: 55639.8 Da PI: 5.8347 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 79.6 | 3.7e-25 | 211 | 266 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvk.gLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G++kA+P++ilelm+ + +Lt+++++SHLQkYR++ Bradi2g08287.1.p 211 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGNEySLTRHNIASHLQKYRSH 266 5689*****************.**************87658**************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.796 | 208 | 268 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 209 | 269 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-16 | 210 | 269 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.9E-24 | 211 | 266 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.8E-8 | 214 | 264 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MLEVASLRSP KADQVFGLGL GGDHSHVGLG FPESGGVDDD DFLLDFIDFS TCDMPFFHVD 60 GDILPDLEVD SADLLALDFA SSSSPDEPSL EDGRWGSAVD DEAVTKAMEV GVEAELGGDS 120 MDMELPRDEN HKDEKLEVLL EDEKDEKKHN NNVVAGDEAV SSAVTSTEDS AAAAASDNKS 180 SSASAEGQSK RTSTKTPSAA VAGKSSHGRR KVKVDWTPEL HRRFVQAVEQ LGIDKAVPSR 240 ILELMGNEYS LTRHNIASHL QKYRSHRKHL MAREAEAASW TQKRQMYAAA AGVAPRKPDG 300 AAAGPWVVPT IGFPPPGTMP PPPPPTAHHP GAQPPPFCRP LHVWGHPSAA AGVDAPAHPQ 360 MLPIWPRHLA PPPAWAHQPP VDPAYWHQQY NAARKWGPQA VTQGTPCGPP PMPPPAMMQR 420 FAAPVPGMMP HPMYRPIPPP VVPSPAPPSN IKLAGLPLQL DAHPSKESID AAIGDVLVKP 480 WLPLPLGLKP PSLDSVMTEL HKQGIPKVPP ATTTASGGAT TG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00022 | PBM | Transfer from AT2G20570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g08287.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:11340194}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003565554.1 | 0.0 | probable transcription factor GLK2 isoform X1 | ||||
Swissprot | Q5NAN5 | 1e-126 | GLK2_ORYSJ; Probable transcription factor GLK2 | ||||
TrEMBL | A0A0Q3FVQ9 | 0.0 | A0A0Q3FVQ9_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G08287.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2415 | 38 | 86 | Representative plant | OGRP2840 | 15 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 3e-59 | GBF's pro-rich region-interacting factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g08287.1.p |
Entrez Gene | 100821188 |
Publications ? help Back to Top | |||
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