PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g08080.2.p | ||||||||
Common Name | BRADI_2g08080, LOC100844558 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 570aa MW: 62096.1 Da PI: 7.3288 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.7 | 8.7e-13 | 415 | 461 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq Bradi2g08080.2.p 415 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 461 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.5E-17 | 60 | 141 | IPR025610 | Transcription factor MYC/MYB N-terminal |
Pfam | PF14215 | 5.1E-12 | 144 | 197 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.806 | 411 | 460 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-18 | 414 | 476 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.53E-15 | 414 | 465 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.9E-18 | 415 | 473 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-10 | 415 | 461 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-16 | 417 | 466 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MVMKMEVEED GANGGTGGTW TEEDRALSTT VLGRDAFAYL TKGGGAISEG LVAASLPADL 60 QNKLQELIES EHPHGGWNYA IFWQLSRTKS GDLVLGWGDG SCREPHDGEV GGAASVGNDD 120 ANQRMRKRVL QRLHTAFGGA DEEDYAPVNY CYRGYLASTA GFRTIVLVPF ETGVLELGSM 180 QQVVESPDAL QAIKAVFAGS GNIVQRREGN GHIEKSPGLA KIFGKDLNLG RPSAAPVIGV 240 PKGDERSWEQ RAAGAGVGSS LLPNVQKGLQ NFTWSQARGL NSHQQKFGNG ILIVSNEVPH 300 NNGAADSPTT AQFQLQKATQ LQKLPQLQKQ PPQLVKPLQM VNQQQLQAQA PRQIDFSAGT 360 SSKSGVLVAR TAVLDGESSE VNGLCKEEGA PPIIEDRRPR KRGRKPANGR EEPLNHVEAE 420 RQRREKLNQR FYALRAVVPN ISKMDKASLL GDAIAYITDL QKKLKDMETE RERFLESGMA 480 DPRDRAPRPE VDIQVVRDEV LVRVMSPMEN HPVKKVFEAF EEAEVRVGES KVTGNNGTVV 540 HSFIIKCPGS EQQTREKVIA AMSRAMNMV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-28 | 409 | 471 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 2e-28 | 409 | 471 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 2e-28 | 409 | 471 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 2e-28 | 409 | 471 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 2e-28 | 409 | 471 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 2e-28 | 409 | 471 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 2e-28 | 409 | 471 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 2e-28 | 409 | 471 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 396 | 404 | RRPRKRGRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00100 | PBM | Transfer from AT1G01260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g08080.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376820 | 0.0 | AK376820.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3137B23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566142.1 | 0.0 | transcription factor bHLH13 | ||||
TrEMBL | A0A2K2D7G7 | 0.0 | A0A2K2D7G7_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G08080.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46510.1 | 5e-54 | ABA-inducible BHLH-type transcription factor |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g08080.2.p |
Entrez Gene | 100844558 |