PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g07357.1.p
Common NameBRADI_2g07357, LOC100831723
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 360aa    MW: 39024.2 Da    PI: 4.5879
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g07357.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.5e-20125175155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAa+ ++ a+ kl+g
  Bradi2g07357.1.p 125 PRFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAARVYDSAAIKLRG 175
                       689*******.**********88.....55*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.93E-31125185No hitNo description
PfamPF008471.8E-12125175IPR001471AP2/ERF domain
SMARTSM003807.1E-36126189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-29126185IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-21126184IPR016177DNA-binding domain
PROSITE profilePS5103223.617126183IPR001471AP2/ERF domain
PRINTSPR003672.7E-10127138IPR001471AP2/ERF domain
PRINTSPR003672.7E-10149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MWPMEEEFYM PVKRTEHVEV TSRVVAVSSS PASSAKAKGK YPKTVRVFCE DNDATDSSSD  60
EEGAPERRRV KRYVQELRLE PAVPAKARSA EDAAPAPAAP MTAATTKALV PVRKRKAGAD  120
AGGSPRFRGV RRRPWGKYAA EIRDPWRRVR VWLGTFDTAE EAARVYDSAA IKLRGPDATV  180
NFQESEDGDM EVPPEVAERL PQPPAAAAGS KNASSSATSY DSCEESHVAA ASPTSVLRCS  240
FHPSTLSTVG GDDNTSKKPS ASFRSVETGE SSGVFGCSFP DNSFAGELPP LFTDFDLLSD  300
FPEPPMDFLS NLPEEHFPFS NDSSPDFRLD PPSPAALQQA DEFFEDITDL FQIDPLPAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-20115182671Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g07357.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565510.10.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A0Q3FVD40.0A0A0Q3FVD4_BRADI; Uncharacterized protein
STRINGBRADI2G07357.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-34cytokinin response factor 4