PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g05750.1.p
Common NameBRADI_2g05750, LOC100838769
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 386aa    MW: 41204.1 Da    PI: 7.4125
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g05750.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.7e-08123143526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        C++f++ G Ck+Gd C +aHg
  Bradi2g05750.1.p 123 ACPDFRK-GGCKRGDACEYAHG 143
                       7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-5118144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103119145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5122145IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-6123143IPR000571Zinc finger, CCCH-type
SMARTSM0035623153176IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MMMMSEGVSV PPWGNLPVSG GVDGGGVGGC GGDEMSPHIF AALRHFLPCN DAAGGFGADD  60
EDEAAAMAAA VDAYGGDEFR MYDFKVRRCV RGRSHDWTEC PFAHPGEKAR RRDPRKYHYS  120
GTACPDFRKG GCKRGDACEY AHGVFECWLH PARYRTQACK DGTACRRRVC FFAHTREQLR  180
EMPAPQHSSP RSTPLSPLAE SYDGSPLRRQ VFESYLNNKG IVSSSPTSTY LSSPPKSPPS  240
ESPPLSPDGA AAIRRGSWPG VGSPVNDVLA SFRQLRIGKA KSAPSGGWTY PASAAVAYGS  300
PRDAGLYSLP SSPMATPTAN SSFMANLEPL SLCFMDDDEP VQRVESGRAL REKVFERLSR  360
DGTPSGGAAA GVGGPDVGWV SDLIN*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g05750.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564747.10.0zinc finger CCCH domain-containing protein 2
SwissprotQ9FU270.0C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLI1HCW50.0I1HCW5_BRADI; Uncharacterized protein
STRINGBRADI2G05750.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.18e-72C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]