PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g77120.1.p | ||||||||
Common Name | BRADI_1g77120, LOC100841302 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 27522 Da PI: 5.3562 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.4 | 5.4e-16 | 49 | 107 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ + grWv+e+r+p + + kr +r +lg++ +ae Aa+a++aa++ l+ Bradi1g77120.1.p 49 PVYHGVRRRGRAGRWVCEVRVPGTgSCnkKRgQRLWLGTYFSAECAARAHDAAMLMLRA 107 68*******************87763354457**********************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.2E-12 | 49 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-12 | 50 | 123 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.572 | 50 | 117 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-20 | 50 | 119 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-12 | 50 | 118 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.27E-12 | 63 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDGSCQWMSF TSSSSSSSSS HNGQAGAPWP PPPPKRPAGR TKFKETRHPV YHGVRRRGRA 60 GRWVCEVRVP GTGSCNKKRG QRLWLGTYFS AECAARAHDA AMLMLRAAPG ARVLNFPDSE 120 WLLDVPIMAL PAAADLSCVR RASVAAVADF QRREPAANGA AAVLDLDEAA VSWATTSSQL 180 ARANNNGGML MFDFEVPVAA MGSDGMFELE DICGETDLDM YYTELAGGLL MEPPPDAGAC 240 WESRDAGADA DLWSCY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g77120.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM071406 | 1e-41 | AM071406.1 Avena sativa mRNA for CBF-like transcription factor (cbf1 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003562170.1 | 0.0 | dehydration-responsive element-binding protein 1H | ||||
Swissprot | A2Z388 | 2e-45 | DRE1H_ORYSI; Dehydration-responsive element-binding protein 1H | ||||
Swissprot | Q0J090 | 2e-45 | DRE1H_ORYSJ; Dehydration-responsive element-binding protein 1H | ||||
TrEMBL | I1HAE1 | 0.0 | I1HAE1_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G77120.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 | Representative plant | OGRP6456 | 5 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 4e-19 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g77120.1.p |
Entrez Gene | 100841302 |