PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g76207.2.p | ||||||||
Common Name | BRADI_1g76207, LOC100824125 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 364aa MW: 40011.1 Da PI: 7.0632 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 153.9 | 7.3e-48 | 15 | 141 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrFhPt+eel+++yL + + gkkl++ ++i +++iy+++PwdLp ++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++ s+ Bradi1g76207.2.p 15 PGFRFHPTEEELLDFYLSRVALGKKLHF-DIIGTLNIYRHDPWDLPGMAKIGEREWYFFVPRDRKAGSGGRPNRTTERGFWKATGSDRPIRSA 106 9*************************99.99***************888999****************************************9 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++glkktLvfy+grap+g ktdWvm+eyrl Bradi1g76207.2.p 107 gdPKRVIGLKKTLVFYQGRAPRGIKTDWVMNEYRL 141 766778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-57 | 8 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.318 | 13 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-24 | 15 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045792 | Biological Process | negative regulation of cell size | ||||
GO:0048281 | Biological Process | inflorescence morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MAMALANMEV DQDLPGFRFH PTEEELLDFY LSRVALGKKL HFDIIGTLNI YRHDPWDLPG 60 MAKIGEREWY FFVPRDRKAG SGGRPNRTTE RGFWKATGSD RPIRSAGDPK RVIGLKKTLV 120 FYQGRAPRGI KTDWVMNEYR LPDVQGSGSA APPKEDMVLC KIYRKATPLK ELEQRASAME 180 ELQQQQQRCG YGGKNGPFVA MVAGDRDDYL SSSSFEFDDV VQDNFLIPSS SSSSSSAAAA 240 SGNNNNNRKS DHAPKEAKRE AEAAAVTVAS MPCLPQAASH GASNTPGLKL PAASHGVFDF 300 DLPSLQQLTA VASHGMSDLP SLQLPAAGHG ALDWLQQDPF LAQLRSPWQD QHCLSPYAHL 360 LYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-50 | 15 | 165 | 17 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g76207.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107090 | 1e-169 | AK107090.1 Oryza sativa Japonica Group cDNA clone:002-121-G12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003558884.1 | 0.0 | NAC domain-containing protein 22 | ||||
Swissprot | Q10S65 | 1e-146 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A0Q3P1B1 | 0.0 | A0A0Q3P1B1_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G76207.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1770 | 38 | 105 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 3e-85 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g76207.2.p |
Entrez Gene | 100824125 |
Publications ? help Back to Top | |||
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