PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g73161.1.p
Common NameBRADI_1g73161
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 189aa    MW: 20954.9 Da    PI: 7.2181
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g73161.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.82.9e-061161551554
                       HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +i +  ++L++llP+a   ++ ++  + +L++++ YI+sL
  Bradi1g73161.1.p 116 QISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCSYIRSL 155
                       789999*********8899*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.2E-7100174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.756101155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-8115176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDWVALCLAC SSGFLYFELP LFNTPVATHF FLHALVFPSS NTPSSYLLPV PVFHHLCLSN  60
LSHPNHKPSH LCLSLAKTDL TYLYLGSSTA ALTLSEMSSR RSRSRQSGSS RITDEQISDL  120
VSKLQDLLPE ARLRSNDRVP SSRVLQETCS YIRSLHREVD DLSERLSELL ATSDMSSAQA  180
AIIRSLLM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g73161.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1014851e-114FP101485.1 Phyllostachys edulis cDNA clone: bphyst035e07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752670.11e-56transcription factor ILI6 isoform X2
RefseqXP_014752676.11e-56transcription factor ILI6 isoform X2
RefseqXP_024313619.11e-56transcription factor ILI6 isoform X2
TrEMBLA0A0Q3LJH91e-131A0A0Q3LJH9_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26753378
Representative plantOGRP18771240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.17e-33bHLH family protein