PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g69110.4.p | ||||||||
Common Name | BRADI_1g69110, LOC100833764 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 325aa MW: 34972 Da PI: 4.7695 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.2 | 2.2e-11 | 142 | 189 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ + f L +++P + kK +K++ L ++eY+k+L+ Bradi1g69110.4.p 142 QEHVMAERKRREKLQQQFVSLATIVPGL-----KKTDKISLLGSTIEYVKQLE 189 5799************************.....9*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.005 | 139 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-9 | 142 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.23E-14 | 143 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.7E-16 | 143 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.62E-10 | 144 | 193 | No hit | No description |
SMART | SM00353 | 2.9E-11 | 145 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 9.063 | 255 | 324 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MEQPNQWLTQ PEEDELAYMY QQDGHVPGME QQFAEPPPLP DQHREQYYTS PMATPSSFHP 60 PRSSNFQSFG GSSSLPNLSF GAMPAVKDEQ GQPPSNFLSF GGQAMATTLN FSGGSGSWQQ 120 DGMEAVQLQA PERRSRAPGN AQEHVMAERK RREKLQQQFV SLATIVPGLK KTDKISLLGS 180 TIEYVKQLEE KVKALEEQGT RRSADSTTVF ESKCCISAGA DNDAAAGTSG GGGGGDGGEY 240 SSPAVEAGIR GNTALLKICC KERRGVLVMV LSELENQGLS IINTNVVPFT DSCLNITITA 300 KIEEGFSSAV DLVKNLTTAL RNFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 152 | ERKRRE |
2 | 148 | 153 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g69110.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010230206.1 | 0.0 | transcription factor bHLH18 isoform X2 | ||||
TrEMBL | A0A0Q3JZ53 | 0.0 | A0A0Q3JZ53_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G69110.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22760.1 | 5e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g69110.4.p |
Entrez Gene | 100833764 |