PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi1g68570.1.p | ||||||||
Common Name | BRADI_1g68570, LOC100827312 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 254aa MW: 26204.9 Da PI: 7.0082 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00025 | 79 | 101 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Bradi1g68570.1.p 79 FTCNYCQRKFFSSQALGGHQNAH 101 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.39E-6 | 76 | 106 | No hit | No description |
PROSITE profile | PS50157 | 11.323 | 79 | 106 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 81 | 101 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence Send to blast |
MKSSNSFLRQ QEPCDDQLSL SDISSQAASN SSSAGPPLAL DLSLAAAAAT ESSTTDSNGS 60 GGSKAAAATA GAREPTRVFT CNYCQRKFFS SQALGGHQNA HRRERTLARR AVHHRLDAFP 120 YGYADVASLP LYGSPGLYHP IGIQAHASAH RQGLLASAER QQHQQEVVVA AAAEARPGRA 180 LLGPMPFLVG GGEEEASCFG TWPGSFRAPA GGVLFTPDAR AFHSGSSNLG GGGSSSGSAL 240 VQADEEPDLT LRL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi1g68570.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK375119 | 1e-72 | AK375119.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3085L06. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003558394.1 | 0.0 | zinc finger protein 4 isoform X2 | ||||
TrEMBL | I1H7L5 | 0.0 | I1H7L5_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G68570.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G80730.1 | 6e-26 | zinc-finger protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi1g68570.1.p |
Entrez Gene | 100827312 |