PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g67770.1.p
Common NameBRADI_1g67770, LOC100842103
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 997aa    MW: 113563 Da    PI: 6.3733
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g67770.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.92e-19113217290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkek.dgkw 76 
                        Y++YA+++GF+ ++++ ++   +g  +++tf C+++gk++    +                 +ek+ r+ ++++tgCka+l ++ ++ +++w
  Bradi1g67770.1.p 113 LYKAYAYRMGFHAVRRTCHNY--EGLRYRSTFSCTQSGKPRAGAPSegpsaryplrskrgaatQEKRARRATSEKTGCKAMLIIRDKRvNDRW 203
                       7***********999998887..7888*************99888889*************9777777888999************999**** PP

              FAR1  77 evtkleleHnHela 90 
                       +v+ ++leHnH+++
  Bradi1g67770.1.p 204 KVEFVDLEHNHPCT 217
                       ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-17113217IPR004330FAR1 DNA binding domain
PfamPF105515.5E-23344438IPR018289MULE transposase domain
PROSITE profilePS509669.495626662IPR007527Zinc finger, SWIM-type
SMARTSM005750.0029637664IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 997 aa     Download sequence    Send to blast
MGEGSGRTRS SRAARAQNPS YQEEEEVAAA ARRVKAEIAD DLNGDPAEDE DEEEVEEGED  60
EMVVASDEEG GDEDEGEAEG GGGDDGFVPR TLEEALVPRV GTVFNSVDEA FSLYKAYAYR  120
MGFHAVRRTC HNYEGLRYRS TFSCTQSGKP RAGAPSEGPS ARYPLRSKRG AATQEKRARR  180
ATSEKTGCKA MLIIRDKRVN DRWKVEFVDL EHNHPCTPDM VRFLKAYREM PESAKKKSKI  240
TDEMDEMVEK SLSEIAETRK FPTRPKRSVT AGAVVAGLRF SRCDSFVQRF REDDLNAVKK  300
FIEKMQQKKP NLIHSWDLDE ESRAKNFFWT DLRSQAQYRY FGDVITLDVT YLQHSRASLP  360
LATLLGVNNH GHLVLLGCGL LSEDSKENYV WLLKRWLSCM NGKAPEAITT SYSDVVAEAV  420
AEVLPHARHR FCFWHILKKL QENVGRTHEK EAICSRFKDV VYDTVTLTDF EKEWGSMVEH  480
YKLKDNEWFS ALYSCRKQWA PGYVNHSFWA GTSAIRKVEK PDPYFDGAVT TKTTLPVFLE  540
QYETTLKGKL EREAYDDLRS YYSRLTLLSG LPFEEQLVEL YTVPMFQAFQ DEIKQLMHVI  600
CKEVDRSGNS VTYMVSELIQ GKKVDYTVVY NNSDKDVWCI CRSFPSRGIL CSHALSVLKQ  660
ENVLMLPSKY ILNRWRKDFR ILNTPASSSS VALVRELSIF DDLYVRGHEY LEDAIDIGAR  720
EPELKEFVLS AMKEAKDKLI RLDQIQQGDQ RVDVNMALTG QASTDRRVDV NMTSNTTPLI  780
HGDRMVDANM TLNTTSMIHG DRRVDMEMQT PHLIHAEGRV DMNMASPHLM QRDRRVDMNM  840
SSPHLIQGDR RVDRNLGSPH FIQSDRRVDM NLASPHMIHG DRRVDMNMAS PHLIHGDRRV  900
DMNMASPHMM QGDTRVDMNM VSTAQDDGMH TFDLVNVNLE GGSLSMAATD FMQMHPHPTV  960
YHPKQLLSMR DQVIDSNKRP NVETNTYFMG GGMHVG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g67770.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752206.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLI1H7C20.0I1H7C2_BRADI; Uncharacterized protein
STRINGBRADI1G67770.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1593133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.19e-83FAR1-related sequence 6