PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g64240.1.p | ||||||||
Common Name | BRADI_1g64240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | AP2 | ||||||||
Protein Properties | Length: 395aa MW: 42751.2 Da PI: 9.2233 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.7 | 4.5e-11 | 120 | 176 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g krk + g + +++Aa+a++ a++k++g Bradi1g64240.1.p 120 SCYRGVTRHRWTGRYEAHLWDnTCRrEGqKRKGRQGG-YEKEDQAARAYDLAALKYWG 176 79*******************5555444666888866.5555**************98 PP | |||||||
2 | AP2 | 49.8 | 8.7e-16 | 221 | 271 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GV++++ grW A+I + +k +lg+f t eeAa+a++ a++k++ge Bradi1g64240.1.p 221 YRGVTRHHHHGRWQARIGRVAG---NKDLYLGTFATQEEAAEAYDIAALKFRGE 271 9***************988532...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.2E-8 | 120 | 176 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-14 | 120 | 185 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.2E-17 | 121 | 190 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.346 | 121 | 184 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-12 | 121 | 185 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.10E-17 | 122 | 184 | No hit | No description |
PRINTS | PR00367 | 6.5E-7 | 122 | 133 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.43E-23 | 219 | 280 | No hit | No description |
SuperFamily | SSF54171 | 6.54E-18 | 219 | 279 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.216 | 220 | 278 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-31 | 220 | 284 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-19 | 220 | 279 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.4E-11 | 221 | 271 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-7 | 260 | 280 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MPPPTNGAMM LTSFPPPMGG MSSDALLFPS DGFSFSADDF FAPPPLAADP TRLPLAPSAC 60 LGHGYGSGSN SSTPDAITIA APTSPRVTTA ILAPVGGSSS APARAPAMPL VPSIMTQRTS 120 CYRGVTRHRW TGRYEAHLWD NTCRREGQKR KGRQGGYEKE DQAARAYDLA ALKYWGANAT 180 TNFPKESYIR EIKEMQSMSR HDLVASLRRK SSGFSRGASM YRGVTRHHHH GRWQARIGRV 240 AGNKDLYLGT FATQEEAAEA YDIAALKFRG ENAVTNFESS RYNLEAIARM DLPINVPRTR 300 LESHKPAAPE AQGQIAPVSA PPFSQQPSNN LQSHLFHSLL PLPPCEPLQA LPVPAGYSFG 360 EPSWPFGDVE QKVQLDSKME VAGGLLQLAN YAAN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g64240.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109839 | 1e-149 | AK109839.1 Oryza sativa Japonica Group cDNA clone:002-148-D11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003561687.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-101 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | I1H651 | 0.0 | I1H651_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G64240.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13579 | 26 | 31 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 2e-87 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g64240.1.p |
Publications ? help Back to Top | |||
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