PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g58450.1.p
Common NameBRADI_1g58450, LOC100834650
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 443aa    MW: 46905 Da    PI: 9.9858
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g58450.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.81.3e-36641903125
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssssasnsssgka 90 
                       g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LG+d++sk++eWL+++a +ai++l+++     ++ +as++  ++++++ +++ s+++
  Bradi1g58450.1.p  64 GGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAVEWLIKAAAAAIDKLPSLdasafPNHPASAS--AAHNNKPHADASQQQ 154
                       78*************************************************************5544422222222..223333333344466 PP

               TCP  91 aksaakskksqksaasalnlak.esrakarararer 125
                        + + +s+ s++s+ s+l+l++ +sr kar r+ + 
  Bradi1g58450.1.p 155 LTRSGCSSTSETSKGSVLSLSRsDSRVKARDRSAKD 190
                       7777799999999999*****999999999996553 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.6E-3664190IPR005333Transcription factor, TCP
PROSITE profilePS5136932.11265123IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDLGGDVPLR KRGRNPEDDD GEETEQGGAK QQRRMGAVVP WPAQPPPQQQ NPASRIYRVS  60
RGSGGKDRHS KVYTAKGIRD RRVRLSVATA IQFYDLQDRL GYDQPSKAVE WLIKAAAAAI  120
DKLPSLDASA FPNHPASASA AHNNKPHADA SQQQLTRSGC SSTSETSKGS VLSLSRSDSR  180
VKARDRSAKD KDDSALAAAG TTRRATAAAA ATSSAQAASF TELLTGLAVA SAAAGTTTTA  240
TTATAPVVAE HKPPPQQHNS WQPMPATADY LGFAQPRKPA HGMLHTTFAS PAPHLANIAP  300
IAMAATQHFS LTSGEPQQAE MAPFSFLQDH FMPVHAAAAA GPAAVDYNLN FSMSSGLVGV  360
NSRGTLQSNS QPHLSSHHHH HHHQQQLQRL SAPLDASHIP FFFSPAVTVA SPNPAEGHFG  420
SAAAFQLWDG FRHSDVKEKG KN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2670124155Putative transcription factor PCF6
5zkt_B1e-2670124155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00639PBMTransfer from Lj6g3v1946420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g58450.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557649.20.0transcription factor PCF6
TrEMBLA0A0Q3K9C90.0A0A0Q3K9C9_BRADI; Uncharacterized protein
STRINGBRADI1G58450.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-34TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2