PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g57070.1.p | ||||||||
Common Name | BRADI_1g57070, LOC100837815 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | YABBY | ||||||||
Protein Properties | Length: 171aa MW: 18876.3 Da PI: 8.8878 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 229.9 | 6.4e-71 | 5 | 158 | 3 | 170 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 v+++se+vCyv+Cn+Cntil+v+vP+++++++vtvrCGhCt++ls++l ++q+++a+++ l+ +++v +n+ s++ ++++++t Bradi1g57070.1.p 5 VQFNSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLGPFHQARTAQEN--------LVPNRGVPANNCGSYEPSSRNQRTM 89 6789******************************************************98........899***********99999988876 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +n+++ +p irPPekrqrvPsaynrfikeeiqr+k+snP+ishreafsaaaknWah+P++hfgl Bradi1g57070.1.p 90 AMY-PMLNNQQQVSP-----IRPPEKRQRVPSAYNRFIKEEIQRLKSSNPEISHREAFSAAAKNWAHLPRLHFGL 158 655.66677777777.....9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.2E-62 | 8 | 158 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.31E-8 | 95 | 152 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.0E-6 | 106 | 152 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 9.14E-6 | 112 | 152 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048833 | Biological Process | specification of floral organ number | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MSSPVQFNSE HVCYVNCNYC NTILVVNVPN NCSYNIVTVR CGHCTMVLSM DLGPFHQART 60 AQENLVPNRG VPANNCGSYE PSSRNQRTMA MYPMLNNQQQ VSPIRPPEKR QRVPSAYNRF 120 IKEEIQRLKS SNPEISHREA FSAAAKNWAH LPRLHFGLSV VDGGGGGGGN * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17369428}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g57070.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274013 | 1e-127 | AB274013.1 Oryza sativa Japonica Group OsYABBY1 mRNA for OsYABBY1 protein, complete cds. | |||
GenBank | AK070045 | 1e-127 | AK070045.1 Oryza sativa Japonica Group cDNA clone:J023038F18, full insert sequence. | |||
GenBank | CT828681 | 1e-127 | CT828681.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA230C13, full insert sequence. | |||
GenBank | CT828682 | 1e-127 | CT828682.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240F12, full insert sequence. | |||
GenBank | CT828683 | 1e-127 | CT828683.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA249C03, full insert sequence. | |||
GenBank | CT832577 | 1e-127 | CT832577.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z37, full insert sequence. | |||
GenBank | FJ750932 | 1e-127 | FJ750932.1 Oryza sativa clone KCS005G02 MADS-box transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003557576.1 | 1e-125 | protein YABBY 1 | ||||
Swissprot | Q7XIM7 | 1e-98 | YAB1_ORYSJ; Protein YABBY 1 | ||||
TrEMBL | I1H3M0 | 1e-123 | I1H3M0_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G57070.1 | 1e-124 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 | Representative plant | OGRP14085 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 2e-54 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g57070.1.p |
Entrez Gene | 100837815 |