PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g54690.2.p | ||||||||
Common Name | BRADI_1g54690, LOC100846367 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 26585.6 Da PI: 7.8919 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.2 | 2.2e-11 | 122 | 169 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR++i +++ L++l+P + +k Ka++L + ++YI+ Lq Bradi1g54690.2.p 122 SHSIAERARREKISERMKMLQDLVPGC----NKVIGKASVLDEIINYIQALQ 169 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.68E-10 | 116 | 173 | No hit | No description |
SuperFamily | SSF47459 | 3.53E-18 | 116 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.145 | 118 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-19 | 118 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.5E-9 | 122 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-11 | 124 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MDPALPEHWR RPVHLGEASS VVTDRSNGGR RRARRDVAAH HGDDSSMLVS TSGTGAGQDL 60 ADPEEKRLKK MESDSADGNL RTNAQTDSGN ASKVVDRNPT PPEPPKQDYI HVRARRGQAT 120 DSHSIAERAR REKISERMKM LQDLVPGCNK VIGKASVLDE IINYIQALQR QVEFLSMKLE 180 AVNAHVNNRI ASFQSKDVGA EPFHTALGLT LDPQTPREHA QGSTSEWLHM QIGNTYERVT 240 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g54690.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003561318.3 | 1e-180 | transcription factor BHLH094 | ||||
Swissprot | Q69WS3 | 1e-106 | BH094_ORYSJ; Transcription factor BHLH094 | ||||
TrEMBL | A0A0Q3HD70 | 1e-178 | A0A0Q3HD70_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G54690.1 | 1e-145 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3065 | 35 | 77 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 1e-61 | BIG PETAL P |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g54690.2.p |
Entrez Gene | 100846367 |