PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g54180.4.p
Common NameBRADI_1g54180, LOC100831882
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 321aa    MW: 33653.3 Da    PI: 8.5712
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g54180.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1765e-24203265163
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       e+e+krerrkq+NRe+ArrsR+RK++e+eeL +kv+eL++eN aL+ el++lkk ++ +++++
  Bradi1g54180.4.p 203 EREIKRERRKQSNRESARRSRLRKQQECEELSRKVAELTTENNALRTELDQLKKACEDMEAQN 265
                       89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165965.7E-870176No hitNo description
Gene3DG3DSA:1.20.5.1706.8E-18202264No hitNo description
PfamPF001701.8E-21203265IPR004827Basic-leucine zipper domain
SMARTSM003388.5E-22203267IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.461205268IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.25E-11206261No hitNo description
CDDcd147025.46E-21208258No hitNo description
PROSITE patternPS000360210225IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MQHLMAAAAS GAPYGAPVPF PMYHPGAAMA YYAQASMAAG VPYPTAEAVA AAPAVAEGKG  60
KGKGGGVSPE KGSSAAPSGD DGSRSCDSGS DDSSDTRDYD TDHKDSSAAK KRKSGNTSAE  120
GEPSQTAVVT YAAESPYQLK ARSASKLPVS APGRAALPNA TPNLNIGIDL WSASQPVAVL  180
PGQGEASPGL ALARCDGVGQ LDEREIKRER RKQSNRESAR RSRLRKQQEC EELSRKVAEL  240
TTENNALRTE LDQLKKACED MEAQNTRLME PAAVTTTLGM SIEAPKVKQH EDEGKLHKKS  300
NNNSNGKYVG GSRKPEANSR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219225RRSRLRK
2219226RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g54180.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankWHTHBP1ALZ0.0D64051.1 Triticum aestivum mRNA for HALF-1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228232.10.0DNA-binding protein EMBP-1 isoform X2
SwissprotP250326e-54EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A0Q3HBW90.0A0A0Q3HBW9_BRADI; Uncharacterized protein
STRINGBRADI1G54180.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.16e-27basic region/leucine zipper transcription factor 16