PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g53650.4.p | ||||||||
Common Name | BRADI_1g53650, LOC100821738 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | AP2 | ||||||||
Protein Properties | Length: 420aa MW: 45860.2 Da PI: 6.5129 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 2.8e-17 | 108 | 157 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Bradi1g53650.4.p 108 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 157 78*******************......55************************998 PP | |||||||
2 | AP2 | 41.6 | 3.2e-13 | 200 | 250 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ +++g Bradi1g53650.4.p 200 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAVRFNG 250 89********.7******...5...334336**********99**********99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-9 | 108 | 157 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-16 | 108 | 166 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-17 | 109 | 165 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.728 | 109 | 165 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.15E-11 | 109 | 164 | No hit | No description |
SMART | SM00380 | 2.1E-31 | 109 | 171 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-16 | 200 | 258 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.81E-25 | 200 | 258 | No hit | No description |
Pfam | PF00847 | 1.5E-8 | 200 | 249 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-16 | 201 | 258 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.028 | 201 | 258 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-31 | 201 | 264 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-6 | 202 | 213 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-6 | 240 | 260 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MVLDLNAESP GGSGSATSSS SPPDSGGFRF DLLGGSADDE GCLLPVMTHQ LFPSPDAGFH 60 AAAAAVAASD DSPPLPPDSL PRLPADLGVA PGGAGGKKSR RGPRSRSSQY RGVTFYRRTG 120 RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGLEA DINFSLNDYE EDLKQMKNWT 180 KEEFVHILRR QSTGFARGNS KYRGVTLHKC GRWEARMGQL LGKKYIYLGL FDSEIEAARA 240 YDRAAVRFNG REAVTNFDST SYDRDVLPET ENEVEHISAV VDEDIIDLNL RISQPKVHDL 300 KGDDILTGFE LSCDSPQVTR PFVSQPVNPQ WPIHSEASIQ PQNQHLYASP CLGIVVNVKE 360 VPVEKRSDLG TQSFPAWSWQ MQGPRSPVPL LATAASSGFS TATQPHPFAG HRLYFPPTA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g53650.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT831975 | 1e-177 | CT831975.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106E13, full insert sequence. | |||
GenBank | DQ374663 | 1e-177 | DQ374663.1 Oryza sativa (japonica cultivar-group) supernumerary bract mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010228210.1 | 0.0 | floral homeotic protein APETALA 2 isoform X1 | ||||
Swissprot | Q8H443 | 0.0 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | I1H2I5 | 0.0 | I1H2I5_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G53650.4 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 7e-91 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g53650.4.p |
Entrez Gene | 100821738 |
Publications ? help Back to Top | |||
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