PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g53650.1.p
Common NameBRADI_1g53650, LOC100821738
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 415aa    MW: 45294.6 Da    PI: 6.5872
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g53650.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.8e-17108157155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Bradi1g53650.1.p 108 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 157
                       78*******************......55************************998 PP
2AP241.63.1e-13200250155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ +++g
  Bradi1g53650.1.p 200 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAVRFNG 250
                       89********.7******...5...334336**********99**********99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-9108157IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-16108166IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-17109165IPR001471AP2/ERF domain
PROSITE profilePS5103217.728109165IPR001471AP2/ERF domain
CDDcd000185.75E-11109164No hitNo description
SMARTSM003802.1E-31109171IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-16200258IPR016177DNA-binding domain
PfamPF008471.5E-8200249IPR001471AP2/ERF domain
CDDcd000182.11E-25200258No hitNo description
Gene3DG3DSA:3.30.730.105.4E-16201258IPR001471AP2/ERF domain
PROSITE profilePS5103216.028201258IPR001471AP2/ERF domain
SMARTSM003803.1E-31201264IPR001471AP2/ERF domain
PRINTSPR003671.8E-6202213IPR001471AP2/ERF domain
PRINTSPR003671.8E-6240260IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MVLDLNAESP GGSGSATSSS SPPDSGGFRF DLLGGSADDE GCLLPVMTHQ LFPSPDAGFH  60
AAAAAVAASD DSPPLPPDSL PRLPADLGVA PGGAGGKKSR RGPRSRSSQY RGVTFYRRTG  120
RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGLEA DINFSLNDYE EDLKQMKNWT  180
KEEFVHILRR QSTGFARGNS KYRGVTLHKC GRWEARMGQL LGKKYIYLGL FDSEIEAARA  240
YDRAAVRFNG REAVTNFDST SYDRDVLPET ENEAVVDEDI IDLNLRISQP KVHDLKGDDI  300
LTGFELSCDS PQVTRPFVSQ PVNPQWPIHS EASIQPQNQH LYASPCLGIV VNVKEVPVEK  360
RSDLGTQSFP AWSWQMQGPR SPVPLLATAA SSGFSTATQP HPFAGHRLYF PPTA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g53650.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228211.10.0floral homeotic protein APETALA 2 isoform X2
SwissprotQ8H4430.0AP23_ORYSJ; APETALA2-like protein 3
TrEMBLI1H2I30.0I1H2I3_BRADI; Uncharacterized protein
STRINGBRADI1G53650.40.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.39e-92related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]