PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g51030.1.p
Common NameBRADI_1g51030, LOC100821463
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 596aa    MW: 62321 Da    PI: 8.5563
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g51030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.53.2e-29254313159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+aed ++++ tYeg+Hnh+
  Bradi1g51030.1.p 254 MNDGCQWRKYGQKISKGNPCPRAYYRCTVAaGCPVRKQVQRCAEDMSILISTYEGRHNHP 313
                       58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-30239313IPR003657WRKY domain
SuperFamilySSF1182904.84E-26247314IPR003657WRKY domain
PROSITE profilePS5081128.265249315IPR003657WRKY domain
SMARTSM007742.8E-35254314IPR003657WRKY domain
PfamPF031061.5E-25255313IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MIKGETWRQL GNHEDRLKGE MKDDHRVSDD SFFKTLQNQS STTKEVQHDR LASTRAEMGE  60
VRQENERLKT MLSRIIEDHR SLQKHFNDVL QQGREKKLAG RSPADVEETE LVSLSLGTST  120
STSSRWYTTE EKSSTIAEGQ GRQLGLLKIR QGAAGISLGL SAGSQLSGAT DQKVPRPDVL  180
LSLSPEGSSE ETAKDADDTT ASMEQWPAPS QTAKSSRSGA GTGGTETEDE VAPQAPMVKK  240
ARVSVRARCD APTMNDGCQW RKYGQKISKG NPCPRAYYRC TVAAGCPVRK QVQRCAEDMS  300
ILISTYEGRH NHPLSASASA MASTTSAAAS MLLSGSSSSS PGLLFPSPSL SFGGLPATSI  360
TAAPSASSHP TITLDLTSPP TPATASHSHS PFSFSSSRFS SSLLFNGSGG SSRYPPSTSF  420
SFSGSGSTNA TTTAAWPATG GYLSYGQSPP SLSGSSSYNN AGNGNGIVVQ GRQLQLQQQG  480
GSTSAALYQQ QRLAVVPPQV DTIAKVITSD PGFHTALAAA ITSYVGTTKP AVTPPTGGGG  540
LEWGEHLGLG PASASAVESG KAPFLQPSRA LSGSTSGTAS MSPVKNREHT LAEGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-202543161778Probable WRKY transcription factor 4
2lex_A3e-202543161778Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g51030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229976.20.0probable WRKY transcription factor 61
TrEMBLA0A0Q3HAB20.0A0A0Q3HAB2_BRADI; Uncharacterized protein
STRINGBRADI1G51030.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.13e-45WRKY DNA-binding protein 61