PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g49570.1.p | ||||||||
Common Name | BRADI_1g49570, LOC100846470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 23880.5 Da PI: 5.8787 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.2 | 4e-18 | 39 | 90 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ grWv+e+r+p +k+ r +lg+f+++e Aa+a++ a+++l+g Bradi1g49570.1.p 39 PVYRGVRRRGAAGRWVCEVREP---NKKSRLWLGTFDSPEAAARAHDVAALALRG 90 68****************9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.2E-14 | 39 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-26 | 40 | 104 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.616 | 40 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.62E-20 | 40 | 100 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 40 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-5 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-5 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MDHHHYEDGC GGGVGYATVT SAPPKRPAGR TKFRETRHPV YRGVRRRGAA GRWVCEVREP 60 NKKSRLWLGT FDSPEAAARA HDVAALALRG RAACLNFADS ASLLAVDPAT LRTPEDIRAA 120 AIRLAESACP AAAASMPMSA SASASETMAM VQQQEEAANA AAAAAYDEYA LCGDMGDWGQ 180 HHCSYFYGDG VVPGGEWQQG SLMDGDDDGY RYGYGAGDVA LWSY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g49570.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY785854 | 2e-93 | AY785854.1 Hordeum vulgare subsp. vulgare cultivar Morex HvCBF5 (CBF5) gene, complete cds. | |||
GenBank | AY785855 | 2e-93 | AY785855.1 Hordeum vulgare subsp. vulgare cultivar Dicktoo HvCBF5 (CBF5) gene, complete cds. | |||
GenBank | AY785856 | 2e-93 | AY785856.1 Hordeum vulgare subsp. vulgare cultivar Strider HvCBF5 (CBF5) gene, complete cds. | |||
GenBank | AY785857 | 2e-93 | AY785857.1 Hordeum vulgare subsp. vulgare cultivar 88Ab536 HvCBF5 (CBF5) gene, complete cds. | |||
GenBank | AY785858 | 2e-93 | AY785858.1 Hordeum vulgare subsp. vulgare cultivar Optic HvCBF5 (CBF5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003561115.1 | 1e-163 | dehydration-responsive element-binding protein 1C | ||||
Swissprot | A2Y8S6 | 8e-57 | DRE1C_ORYSI; Dehydration-responsive element-binding protein 1C | ||||
Swissprot | Q9LWV3 | 8e-57 | DRE1C_ORYSJ; Dehydration-responsive element-binding protein 1C | ||||
TrEMBL | I1H147 | 1e-162 | I1H147_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G49570.1 | 1e-163 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 | Representative plant | OGRP12742 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 1e-23 | dehydration response element B1A |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g49570.1.p |
Entrez Gene | 100846470 |
Publications ? help Back to Top | |||
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