PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g46700.2.p
Common NameBRADI_1g46700, LOC100841109
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 477aa    MW: 51001.8 Da    PI: 4.8425
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g46700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11326371555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+++Er RR++i +++ +L+el+P++      K +K+++L + ++Y+k Lq
  Bradi1g46700.2.p 326 HSIAERLRREKISERMKNLQELVPNS-----NKADKSSMLDEIIDYVKFLQ 371
                       99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-16319381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.29E-12319375No hitNo description
PROSITE profilePS5088816.876321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-16323380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8326371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-13327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MDYSAGSFFS SWPANSASEN YSFVDGSVGS YAEEGSMKPA GYFMRAGSDH NLMFNEHEKN  60
PTVLTNGCLP YSAQTDLLSS EILSTGKPSN SIVEFQQFQG NGNLQSNLIP QGTLHCNPTP  120
GTFDPPLDTS GLLELPHALS SSIESNDSEI SAFLADVQAV SSASTLCSTF QNVSSYMEPV  180
NVEAFGFQGV QSAAMFNKTS HSNGNLPVFD KAPVASIHDC REFLNGSISS FATAQQSQLA  240
TGGFKAEQQE QNTMCNIPLP SFVSGGQMAV TEAQQITSLV HNNKSEYPVP IGHSSDVQPQ  300
ANSAHGNSVS AKPRSRARRG QATDPHSIAE RLRREKISER MKNLQELVPN SNKADKSSML  360
DEIIDYVKFL QLQVKVLSMS RLGAPGAVLP LLRESQTEGH SNSSLSGTTT SQGLLDVANP  420
EDSVVFEQEV IKLMETSITS AMQYLQNKGL CLMPIALASA ISNQKGVSAA AIPPEQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g46700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3636630.0AK363663.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2017O24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227911.10.0uncharacterized protein LOC100841109
TrEMBLI1H0420.0I1H042_BRADI; Uncharacterized protein
STRINGBRADI1G46700.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-56LJRHL1-like 1