PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g44328.1.p
Common NameBRADI_1g44328
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 263aa    MW: 30201.1 Da    PI: 6.8444
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g44328.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.3e-13154198347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        WTteE+ l++++ + +G+g Wk I++++ + Rt+ q+ s+ qky
  Bradi1g44328.1.p 154 FWTTEEHRLFLRGLRGYGSGKWKDISKYFVTSRTPVQISSHAQKY 198
                       6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.558147203IPR017930Myb domain
SMARTSM007174.3E-10151201IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.2E-13152201IPR006447Myb domain, plants
SuperFamilySSF466892.14E-15152204IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-11152200IPR009057Homeodomain-like
CDDcd116601.59E-8153192No hitNo description
PfamPF002492.1E-10155198IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MNLGANIDQD WTSSEVEEAR SIITGGYHEE NKKLNIISEL QEKFPSKPMH QVRDLYVDIF  60
VEMSMTQCQE KEYGGADRMH GVICTIDGHV NKNYGVLEEE VSMDDKEFSH GFPLKHAGVV  120
ETMKEVPVPK ENKGEVLENK MSIHQPVEHC TKRFWTTEEH RLFLRGLRGY GSGKWKDISK  180
YFVTSRTPVQ ISSHAQKYFK RLQSKRSGMQ RYSIHDVELD EEMENSSRPS KHAATIPTSS  240
FHQVPSNPCV TMDNIARFKF PF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g44328.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751741.11e-118uncharacterized protein LOC104582208
TrEMBLA0A0Q3H7V10.0A0A0Q3H7V1_BRADI; Uncharacterized protein
STRINGBRADI1G44330.11e-117(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-20MYB family protein