PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g43710.4.p | ||||||||
Common Name | BRADI_1g43710, LOC100831717 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | G2-like | ||||||||
Protein Properties | Length: 475aa MW: 50887.4 Da PI: 6.1979 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.6 | 1.2e-27 | 189 | 243 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQkYR++ Bradi1g43710.4.p 189 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSH 243 6799*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.924 | 186 | 245 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-27 | 187 | 246 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.08E-19 | 187 | 246 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-26 | 189 | 243 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.6E-8 | 192 | 241 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010638 | Biological Process | positive regulation of organelle organization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MLAVSTPRCG ADAEDQRAVE LETAGAHFDM DQLDFTVDDI DFGDFFLRLE HGDALPDLEV 60 DDDPAADIFS DFEAAVATGG AVEELQDQEV PCDELLPGSL LHDDVGSVSP TGGGVIGAVE 120 NMAFAEAADD GEKEGCNQAM EDGNVNCNVG GNGAAMEDAK SPCSTASSSQ EAESRHKSSR 180 KKNSHGKKKA KVDWTPELHR RFVQAVEQLG IDKAVPSRIL EIMGIDSLTR HNIASHLQKY 240 RSHRKHMLAR EAEAASWTQR RHAYAAGGPA GAAKKQETSM WTVPTIGFSP SPAPLPPPPP 300 PPHPAMQHFA RPLHVWGHPS TDPHSPRVAV WPPRHPATPR GPVPPPPPSW AAPPPTFWHH 360 PYMRGPAHAY MPATHGTPCV AMPMAPAKFP APPVAGVMPC PVYTPLSAPA SKKQQDSQLQ 420 LQAQPIVRSV NLVVAKSAET TTALNKEVLT KSKGTLWSLG FEPTFQHATT VVLM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-16 | 186 | 241 | 2 | 57 | ARR10-B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g43710.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:11340194}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014752396.1 | 0.0 | probable transcription factor GLK1 isoform X3 | ||||
Swissprot | Q5Z5I4 | 1e-135 | GLK1_ORYSJ; Probable transcription factor GLK1 | ||||
TrEMBL | A0A0Q3NMA9 | 0.0 | A0A0Q3NMA9_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G43710.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44190.1 | 5e-43 | GOLDEN2-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g43710.4.p |
Entrez Gene | 100831717 |
Publications ? help Back to Top | |||
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