PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g43650.2.p
Common NameBRADI_1g43650
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 429aa    MW: 46416.3 Da    PI: 5.8512
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g43650.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.9e-09272320355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Bradi1g43650.2.p 272 NSHSLAERVRREKISERMKFLQDLVPGC----SKVIGKAVMLDEIINYVQSLQ 320
                       58*************************9....566*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.94E-10267324No hitNo description
SuperFamilySSF474591.15E-16267337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.205269319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-16272334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-6272320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-9275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MEMNEKNDAD LEKDQPSGHN QHPSFHGPGF STEAQIDSST NALAAMGNPF PPGLWNPPGQ  60
NFGLSETNTN AMITGHPFSS FLGMLSAAVP TYAGPSGFMD CGTGFPSLNG GNLGPMMDHP  120
FPRNQPLGSF QNGTEPSREI EMTVDEGCKD GVSLAADRQQ GDTEGSHGVD ASKEFSKPGC  180
SGGVCQDEGP SVSSAKKRKR SGQDRGVKHV QEGSQQLATV VAKQEKDNDE KDGPKRPISA  240
SRKSNGKQTE DNSDAPKEDY IHIRARSGQA TNSHSLAERV RREKISERMK FLQDLVPGCS  300
KVIGKAVMLD EIINYVQSLQ RQVEFLSMKL STVNPALDFN IERILSKDFF QSQGTPASSA  360
FGFLPENSHH FLHQPKHSQA ALHGIVNPTD AFGRVTNAQM PNNFDGEFHN VTGMPFSLFN  420
DQESNVEP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195200KKRKRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g43650.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7308970.0EU730897.1 Brachypodium distachyon clone BAC DB038O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563957.10.0transcription factor bHLH49
TrEMBLC3SA800.0C3SA80_BRADI; Putative TA1 protein
STRINGBRADI1G43650.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.33e-65bHLH family protein
Publications ? help Back to Top
  1. Huo N, et al.
    Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat.
    Plant Mol. Biol., 2009. 70(1-2): p. 47-61
    [PMID:19184460]