PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g42950.2.p
Common NameBRADI_1g42950
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 432aa    MW: 47480.6 Da    PI: 5.3657
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g42950.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-0582103223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       +Cp Cgk F++  ++  H+r+H
  Bradi1g42950.2.p  82 QCPECGKYFKNDKSMFGHLRSH 103
                       7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.00881103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.24281108IPR007087Zinc finger, C2H2
PfamPF139120.006782103IPR007087Zinc finger, C2H2
SuperFamilySSF576671.62E-882103No hitNo description
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SuperFamilySSF576671.62E-8295322No hitNo description
PROSITE profilePS5015710.076300327IPR007087Zinc finger, C2H2
PfamPF139122.7E-8300324IPR007087Zinc finger, C2H2
SMARTSM003550.023300322IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280302322IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MLSHDELNGT NAAAPAFTQE VLHEEVLLSG DDACTGGEEG VLFGDEYARE EVEEGEILPV  60
TGQEVDLSDQ DWEEHGSVGD VQCPECGKYF KNDKSMFGHL RSHPNRGYKG ATPPTKPSAT  120
PPTKPKKLLP NDDGIASPVD KVRYSQRDPN LNSYEVLAAY VMLTLKSSDD QAAPVAPDNK  180
RKYESGELDV PEEELVMSKG GADVMLSNHY GSSAADKPGD DAVRRNNHDS AVAVLAGSDM  240
VLRDEHASSV AGMNAVLHNE HGSSSVAEVP RKAWRKKSKE GREGHRKEKG VRSPKEKRPY  300
ICKHCPAEFP SHQALGGHMA AHNKEKRIQA QIEQAADEAH LGKVEQSLNR QEANCGSDES  360
RRASLPLSTR ELLMERYNTL FQEGWQSRQG YVRQHIDSKD GDSPMIAPLV IARDRHRLLD  420
IDLNVEAPEK E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g42950.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313820.10.0uncharacterized protein LOC112270196
TrEMBLA0A0Q3JLH50.0A0A0Q3JLH5_BRADI; Uncharacterized protein
STRINGBRADI1G42950.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2082455
Representative plantOGRP1588633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.15e-07C2H2 family protein