PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g39472.1.p
Common NameBRADI_1g39472, LOC100834454
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 303aa    MW: 33080.8 Da    PI: 6.6019
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g39472.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.81.3e-24168227259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES.--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYeg.eHnhe 59 
                        D ++WrKYGqK+vkgs+++rsYYrC++a +C ++k +e + +dp++++ tY+g +Hnh+
  Bradi1g39472.1.p 168 ADPWAWRKYGQKTVKGSPYTRSYYRCSTAkECGARKIMELCPTDPDTLILTYTGaDHNHP 227
                       599***********************9998***********************956***7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-24157229IPR003657WRKY domain
PROSITE profilePS5081124.271162229IPR003657WRKY domain
SMARTSM007741.5E-23167228IPR003657WRKY domain
SuperFamilySSF1182909.29E-21167229IPR003657WRKY domain
PfamPF031061.3E-19169227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MKGDAGWYYQ SASQNDWDLN AVVRYACGGR VSQPRPSDDP FASFLPPAQE PVPAPTPDVT  60
TLGAGPSSLL PDLTPNNDDP LAVVDELSIA YLVTQSQLAL QPPPPQPPQP PVAVVQPQQD  120
DAAPVPPPVP QITVGQASGV ERPRSKKQKR HAKKVVKKRV AVGEASEADP WAWRKYGQKT  180
VKGSPYTRSY YRCSTAKECG ARKIMELCPT DPDTLILTYT GADHNHPPPL HRNSLAGTTR  240
NRQQRRHHLP SPPRQHADRQ SPGPSTSPST EMEMEDHTED DDDLLKLLNE ATDTGGHDGE  300
WR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-141692291977Probable WRKY transcription factor 4
2lex_A4e-141692291977Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g39472.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560717.10.0WRKY transcription factor 22 isoform X2
TrEMBLA0A0Q3NLD20.0A0A0Q3NLD2_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125622536
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.14e-29WRKY family protein