PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g36236.2.p

Common Name

BRADI_1g36236, LOC100832625

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 334aa MW: 36662.9 Da PI: 6.2893

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g36236.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.9	7.4e-31	52	106	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt eLH rF++a++qLGG+++AtPk il++m+v+gLt+ hvkSHLQkYRl Bradi1g36236.2.p 52 RQRLRWTDELHGRFLDALTQLGGPDRATPKGILRTMGVQGLTICHVKSHLQKYRL 106 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.822	49	109	IPR017930	Myb domain
SuperFamily	SSF46689	1.11E-17	51	107	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-29	51	107	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.7E-25	53	107	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-5	54	105	IPR001005	SANT/Myb domain
Pfam	PF14379	6.6E-21	138	184	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MRGCQMYEPK PLSSTGSAHN NPIPHNQQIV PTANNAASNI GGNSSNINFA TRQRLRWTDE 60 LHGRFLDALT QLGGPDRATP KGILRTMGVQ GLTICHVKSH LQKYRLSKYI PDPTADGAKS 120 DKKELGNLLA GIESSPGMEL SEALKLQMEV QKRLRDQLEV QRQLQLRIEA QGKYLQKIME 180 EQQRLTGVLC ESGTLNALVP VQELRQDFNK TDPLTPVPTS EPLIRDKAST VSDDHEGTDG 240 LLKDLSSHDE CHSSGREPLT PDSSCGAASP LDIPRDRLDH QNSESVLHHN ILESRSGSDF 300 QQASSVFPSS TRRSDSPAAL YVSEDDFKNS PDV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-20	52	109	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-20	52	109	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-20	52	109	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-20	52	109	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-20	52	109	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-20	52	109	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-20	52	109	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-20	52	109	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-20	52	109	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-20	52	109	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-20	52	109	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-20	52	109	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g36236.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024312887.1	0.0	myb family transcription factor PHL7 isoform X1
Swissprot	Q9SJW0	6e-87	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A0Q3L3I9	0.0	A0A0Q3L3I9_BRADI; Uncharacterized protein
STRING	BRADI1G36236.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2220	38	96
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-87	G2-like family protein

Link Out ? help Back to Top
Phytozome	Bradi1g36236.2.p
Entrez Gene	100832625