PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g35410.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 24059.3 Da PI: 7.9296 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 25.2 | 4.2e-08 | 28 | 73 | 2 | 51 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaark 51 + +GV +g+++AeI++ + ++++lg+f + + Aa a++ a++ Bradi1g35410.1.p 28 KLRGVKSLG-KGKYAAEIWV----K-EleRTVWLGTFPSLKLAACAYELAAR 73 668887555.7*********....3.245*******************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.905 | 28 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-8 | 28 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-8 | 28 | 77 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-12 | 29 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGELAKQAAE AASWEDMCRA MGSRPTKKLR GVKSLGKGKY AAEIWVKELE RTVWLGTFPS 60 LKLAACAYEL AARGILSQGR KASPNFEVLP SPALRLEFED ELDKQELHHR KGYGPRPACL 120 VRFRPEPAES FDPASLYIAP VQAPAESCVS TTLKTGPGAS TSSSSGEGQS ASGGPFKAPM 180 FNPNVTFLAE SVTGDNFTAD ALSRGGLDLL TDPPIYRFIS SSIF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g35410.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010229789.1 | 1e-150 | ethylene-responsive transcription factor CRF6 | ||||
TrEMBL | A0A2K2DMU2 | 1e-162 | A0A2K2DMU2_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G35410.1 | 1e-149 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP37147 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 4e-09 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g35410.1.p |