PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g34695.1.p
Common NameBRADI_1g34695
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARR-B
Protein Properties Length: 308aa    MW: 34365.4 Da    PI: 9.1715
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g34695.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like55.81e-17161210455
           G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       + W+++L e+F++av++LG  e AtP +il +m+vkg+t ++++ HLQkYR 
  Bradi1g34695.1.p 161 ITWSTQLQEKFLQAVKSLG--ESATPGRILWHMDVKGVTSQQIATHLQKYRQ 210
                       78****************4..67****************************6 PP
2Response_reg24.11.8e-0961151105
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.....ESEEEEESSCTTS.EHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.....pDlillDiempgm.dGlellkeireeepklpiivvtahgeeedal 87 
                       +l+ d +pl ++ + + l+k ++ +v  ++++  al+ +k         Dl+l  + + +m  G  +l +   +e ++p i + a+g+ee + 
  Bradi1g34695.1.p   6 ILVLDHDPLSLSTISKTLTKFNF-KVLPFQTAGNALDSFKSGVaedeeLDLVLAEVHLGNMtVGTSVLFHYILNELQVPLITMCAYGDEEALS 97 
                       7999*******************.***************655555566************63566665555445569**************** PP

                       HHHHTTESEEEESS--HH CS
      Response_reg  88 ealkaGakdflsKpfdpe 105
                       +++ +Ga   + Kp dp 
  Bradi1g34695.1.p  98 KCMTLGACFNVLKPLDPP 115
                       **************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.69E-151131IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.7E-143128No hitNo description
PROSITE profilePS5011017.8035125IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-66116IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.65E-77125No hitNo description
SuperFamilySSF466894.66E-11159214IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-16160214IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-16161211IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGNPSILVLD HDPLSLSTIS KTLTKFNFKV LPFQTAGNAL DSFKSGVAED EELDLVLAEV  60
HLGNMTVGTS VLFHYILNEL QVPLITMCAY GDEEALSKCM TLGACFNVLK PLDPPTFNIL  120
VEKAMEHRCR RVKPEGSSIL KKTKEPGVWE PDEYSKKLGQ ITWSTQLQEK FLQAVKSLGE  180
SATPGRILWH MDVKGVTSQQ IATHLQKYRQ KLKQEQDEHQ DANMKLVADL ITSACSATRT  240
KSNNHRTTTQ MKVTPGAAPA IRAQVEKSSV KPEVSNTKAR SSVWDRYSKS LQDRKKSVCD  300
RYQPTRF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g34695.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227447.10.0uncharacterized protein LOC104581506 isoform X1
RefseqXP_010227448.10.0uncharacterized protein LOC104581506 isoform X1
RefseqXP_014754517.10.0uncharacterized protein LOC104581506 isoform X1
RefseqXP_014754521.10.0uncharacterized protein LOC104581506 isoform X1
RefseqXP_024312267.10.0uncharacterized protein LOC104581506 isoform X1
RefseqXP_024312268.10.0uncharacterized protein LOC104581506 isoform X1
RefseqXP_024312269.10.0uncharacterized protein LOC104581506 isoform X1
RefseqXP_024312270.10.0uncharacterized protein LOC104581506 isoform X1
RefseqXP_024312271.10.0uncharacterized protein LOC104581506 isoform X1
TrEMBLA0A0Q3JIC60.0A0A0Q3JIC6_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130171928
Representative plantOGRP1067657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.18e-14response regulator 14