PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g34340.1.p

Common Name

BRADI_1g34340, LOC100822102

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

ARF

Protein Properties

Length: 1150aa MW: 127564 Da PI: 6.2933

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g34340.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.1	7.1e-23	149	250	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F + Bradi1g34340.1.p 149 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--R 237 99***************************954.4444.48********************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++++l+++++r+ Bradi1g34340.1.p 238 DERQQLLLGIRRA 250 577788*9997 PP
2	Auxin_resp	114.8	7.7e-38	275	358	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+ +rr++Gt++g+sdldpvrW+nS+Wr+L+ Bradi1g34340.1.p 275 AAHADANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 358 78999*****************************9*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	33	No hit	No description
SuperFamily	SSF101936	1.83E-42	137	278	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	9.3E-42	141	264	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.13E-19	148	240	No hit	No description
PROSITE profile	PS50863	11.899	149	251	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.6E-21	149	250	IPR003340	B3 DNA binding domain
SMART	SM01019	7.4E-23	149	251	IPR003340	B3 DNA binding domain
Pfam	PF06507	2.2E-32	275	358	IPR010525	Auxin response factor
Pfam	PF02309	8.5E-10	1014	1100	IPR033389	AUX/IAA domain
PROSITE profile	PS51745	25.965	1015	1099	IPR000270	PB1 domain
SuperFamily	SSF54277	1.86E-7	1030	1094	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1150 aa Download sequence Send to blast
MMKQQQQQPA PAPAVSSAAG AAVTVASLAG AGCEGEKKAP VINSELWHAC AGPLVSLPPA 60 GSLVVYFPQG HSEQVAASMQ KDVDAHVPNY PNLPSKLICL LHNITLHADL ETDEVYAQMT 120 LQPVTSYGKE ALQLSELALK QSRPQNEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDF 180 SMQPPAQEIQ ARDLHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVIFVRDER 240 QQLLLGIRRA NRQPTNISSS VLSSDSMHIG ILAAAAHADA NNSPFTIFYN PRASPTEFVI 300 PFAKYQKAVY GNQLSLGMRF RMMFETEELG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG 360 WDESAAGERR NRVSIWEIEP VAAPFFICPP PFFGSKRPRQ LDDESSEMEN LLKRAMPWLG 420 EEICIKDPQT QNTIMPGLSL VQWMNMNMQQ GSSFANTAMQ SEYLRSITNP SMQNIGSTDL 480 SRQLLQNQLL QQNNIQFNTP KLPQQMQPNN DLSKAALPLN QLGVSTKLQE QTQDASNLQR 540 QQQSMNYALP LSQAQTSLAQ AQVLVQNQMQ QQPMSQNQLP AASQPPLPQQ QQHQQQQQKL 600 LHQQQQQLLL QQQQLQQHNQ NQQQLNKMPA QLPNLANQQL QLSDQQLQLQ LLQKLQQQQQ 660 SFLSQPGVTL AQLPLIQEQQ RLLMDMQQQL SSSHSLTQQQ MMPQQSTKIP SQTTSMPLPM 720 QPDTQQKLPQ KQAVPADTSE AAVPPTTTLN FSSANGSPLR MPGATHSVVT EEIPSCSTSP 780 STANGNHLLQ PGTGRNQYCN MINTEKVPQS TPPMSVPSSL EVVTGPPRIA KELPKLTSNV 840 KQSMVASKLQ NAGAGPQNFV DNAPPTDYLE TASSATSVWL SQTDGLLHQS FPMSNFNQQP 900 MFKDAPPDTE IHADVPSNNT LFGISNDGQV GFPMGTDDFL TNGLDTAKYQ NHISTDIDNS 960 YIIPKDAQQE ISSSMVSQSF GASDMAFNSI DSGINDGTFF NRSSWPPAPP IKRMRTFTKV 1020 YKRGAVGRSI DISQYAGYDE LKHALARMFS IEGQLEERQR IGWKLVYRDH EDDILLLGDD 1080 PWEEFVNCVK YIRILSPQEV QQMSLDGDLG SNIIPNQACS SSDGGGNAWR ARCDQNSGNP 1140 STGSYDQFE*

Sequence ? help Back to Top

Protein Sequence Length: 1150 aa Download sequence Send to blast

MMKQQQQQPA PAPAVSSAAG AAVTVASLAG AGCEGEKKAP VINSELWHAC AGPLVSLPPA  60
GSLVVYFPQG HSEQVAASMQ KDVDAHVPNY PNLPSKLICL LHNITLHADL ETDEVYAQMT  120
LQPVTSYGKE ALQLSELALK QSRPQNEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDF  180
SMQPPAQEIQ ARDLHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVIFVRDER  240
QQLLLGIRRA NRQPTNISSS VLSSDSMHIG ILAAAAHADA NNSPFTIFYN PRASPTEFVI  300
PFAKYQKAVY GNQLSLGMRF RMMFETEELG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG  360
WDESAAGERR NRVSIWEIEP VAAPFFICPP PFFGSKRPRQ LDDESSEMEN LLKRAMPWLG  420
EEICIKDPQT QNTIMPGLSL VQWMNMNMQQ GSSFANTAMQ SEYLRSITNP SMQNIGSTDL  480
SRQLLQNQLL QQNNIQFNTP KLPQQMQPNN DLSKAALPLN QLGVSTKLQE QTQDASNLQR  540
QQQSMNYALP LSQAQTSLAQ AQVLVQNQMQ QQPMSQNQLP AASQPPLPQQ QQHQQQQQKL  600
LHQQQQQLLL QQQQLQQHNQ NQQQLNKMPA QLPNLANQQL QLSDQQLQLQ LLQKLQQQQQ  660
SFLSQPGVTL AQLPLIQEQQ RLLMDMQQQL SSSHSLTQQQ MMPQQSTKIP SQTTSMPLPM  720
QPDTQQKLPQ KQAVPADTSE AAVPPTTTLN FSSANGSPLR MPGATHSVVT EEIPSCSTSP  780
STANGNHLLQ PGTGRNQYCN MINTEKVPQS TPPMSVPSSL EVVTGPPRIA KELPKLTSNV  840
KQSMVASKLQ NAGAGPQNFV DNAPPTDYLE TASSATSVWL SQTDGLLHQS FPMSNFNQQP  900
MFKDAPPDTE IHADVPSNNT LFGISNDGQV GFPMGTDDFL TNGLDTAKYQ NHISTDIDNS  960
YIIPKDAQQE ISSSMVSQSF GASDMAFNSI DSGINDGTFF NRSSWPPAPP IKRMRTFTKV  1020
YKRGAVGRSI DISQYAGYDE LKHALARMFS IEGQLEERQR IGWKLVYRDH EDDILLLGDD  1080
PWEEFVNCVK YIRILSPQEV QQMSLDGDLG SNIIPNQACS SSDGGGNAWR ARCDQNSGNP  1140
STGSYDQFE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-170	38	379	47	388	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g34340.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK369713	0.0	AK369713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2096H17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003563519.1	0.0	auxin response factor 19
Swissprot	Q0D9R7	0.0	ARFS_ORYSJ; Auxin response factor 19
TrEMBL	I1GWQ9	0.0	I1GWQ9_BRADI; Auxin response factor
STRING	BRADI1G34340.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1409	35	106
Representative plant	OGRP4193	11	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	auxin response factor 19

Link Out ? help Back to Top
Phytozome	Bradi1g34340.1.p
Entrez Gene	100822102

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang S, et al. The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1. Plant Cell Environ., 2015. 38(4): p. 638-54 [PMID:24995795]