PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g33870.3.p | ||||||||
Common Name | BRADI_1g33870, LOC104581494 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 203aa MW: 22128.8 Da PI: 8.5988 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.7 | 1.5e-16 | 91 | 143 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Le+ F+ + +s +++eLA++l+L+ rqV vWFqNrRa+ k Bradi1g33870.3.p 91 RKKLRLTKEQCTLLEDSFHAHVILS--QKQELARRLNLSPRQVEVWFQNRRARTK 143 788899*************999987..678***********************98 PP | |||||||
2 | HD-ZIP_I/II | 108.4 | 5.3e-35 | 91 | 176 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+keq +lLE+sF+++ L ++K+elar+L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++++l++en+rL++e +L+ Bradi1g33870.3.p 91 RKKLRLTKEQCTLLEDSFHAHVIL--SQKQELARRLNLSPRQVEVWFQNRRARTKLKQTEVECEFLKRCCESLTDENQRLKHELLDLQ 176 69****************888887..5899*****************************************************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-17 | 66 | 146 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.96E-17 | 71 | 146 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.722 | 87 | 145 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.5E-14 | 89 | 149 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.8E-14 | 91 | 143 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.24E-14 | 91 | 146 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 120 | 143 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 4.8E-8 | 145 | 176 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 9.4E-15 | 145 | 188 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MEQEDFSSWL GLATGGSGGA VRRSQDGAER RRAKEETACE RQQLAAIGES GGEGATKQRI 60 SVRGGGRSPS NGPCPSDGGS DDVAGGSTGT RKKLRLTKEQ CTLLEDSFHA HVILSQKQEL 120 ARRLNLSPRQ VEVWFQNRRA RTKLKQTEVE CEFLKRCCES LTDENQRLKH ELLDLQRSAG 180 PRAAAAAMLN FCPACEKVTL NN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 95 | TRKKLRL |
2 | 137 | 145 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g33870.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010227405.1 | 1e-140 | homeobox-leucine zipper protein HOX18 | ||||
Swissprot | Q5Z6F6 | 3e-46 | HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18 | ||||
TrEMBL | A0A2K2DML8 | 1e-144 | A0A2K2DML8_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G33870.1 | 1e-132 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 4e-41 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g33870.3.p |
Entrez Gene | 104581494 |