PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g32951.3.p
Common NameBRADI_1g32951, LOC100828746
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 353aa    MW: 40641.5 Da    PI: 8.4113
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g32951.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1447.2e-1483162190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fYn Y+ evGF +r +k + + + +   +++ vC + gk+ +e+++         + r+gC a +++ +++d+ w++ + + +HnHel+
  Bradi1g32951.3.p  83 DFYNLYSWEVGFGIRYAKCRLNVHRK-KCMQEIVCGCAGKPLHENSR---------SARCGCPALIRLLRSEDKGWYICEHRDQHNHELS 162
                       6*****************99995555.67899*********998666.........99******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1083162IPR004330FAR1 DNA binding domain
PfamPF105515.6E-14284351IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MNNGVCHAET SMKFPPREGV MKINSEGWTC RVRIGVAPDE REINPERISA LENSIKNYAE  60
RKSNTVVNPM VGTSFDSLED AYDFYNLYSW EVGFGIRYAK CRLNVHRKKC MQEIVCGCAG  120
KPLHENSRSA RCGCPALIRL LRSEDKGWYI CEHRDQHNHE LSKTCGEKLH WQSHRHMDRY  180
TKQLVKQLWE NNINLGKVYS IIGSFFGSMD RIPFTKRSLK TLCGKISREQ SDNDAAKTLD  240
VFSKMLKADP DFKYTVQVDD DSRIKNLMWT SGKSMDQYIC FGDVITFDTT YQTNLYDMPF  300
GLFVAVNNHF QSIILGGVLM RDEKVESFKW VFVEFMWMIG GKDRHPKAIL TG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g32951.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753620.10.0putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_024313565.10.0putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A0Q3H2T00.0A0A0Q3H2T0_BRADI; Uncharacterized protein
TrEMBLA0A0Q3H2T40.0A0A0Q3H2T4_BRADI; Uncharacterized protein
STRINGBRADI1G43906.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.11e-36FAR1-related sequence 10