PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g32951.1.p

Common Name

BRADI_1g32951, LOC100828746

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 381aa MW: 43643.1 Da PI: 8.4705

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g32951.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.8	8.3e-14	83	162	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ evGF +r +k + + + + +++ vC + gk+ +e+++ + r+gC a +++ +++d+ w++ + + +HnHel+ Bradi1g32951.1.p 83 DFYNLYSWEVGFGIRYAKCRLNVHRK-KCMQEIVCGCAGKPLHENSR---------SARCGCPALIRLLRSEDKGWYICEHRDQHNHELS 162 6***************99995555.67899*****998666.........99****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-10	83	162	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.2E-18	284	369	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MNNGVCHAET SMKFPPREGV MKINSEGWTC RVRIGVAPDE REINPERISA LENSIKNYAE 60 RKSNTVVNPM VGTSFDSLED AYDFYNLYSW EVGFGIRYAK CRLNVHRKKC MQEIVCGCAG 120 KPLHENSRSA RCGCPALIRL LRSEDKGWYI CEHRDQHNHE LSKTCGEKLH WQSHRHMDRY 180 TKQLVKQLWE NNINLGKVYS IIGSFFGSMD RIPFTKRSLK TLCGKISREQ SDNDAAKTLD 240 VFSKMLKADP DFKYTVQVDD DSRIKNLMWT SGKSMDQYIC FGDVITFDTT YQTNLYDMPF 300 GLFVAVNNHF QSIILGGVLM RDEKVESFKW VFVEFMWMIG GKDRHPKAIL TDQARMEVAI 360 AEVLPNTKTV GASGMCSKRL *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MNNGVCHAET SMKFPPREGV MKINSEGWTC RVRIGVAPDE REINPERISA LENSIKNYAE  60
RKSNTVVNPM VGTSFDSLED AYDFYNLYSW EVGFGIRYAK CRLNVHRKKC MQEIVCGCAG  120
KPLHENSRSA RCGCPALIRL LRSEDKGWYI CEHRDQHNHE LSKTCGEKLH WQSHRHMDRY  180
TKQLVKQLWE NNINLGKVYS IIGSFFGSMD RIPFTKRSLK TLCGKISREQ SDNDAAKTLD  240
VFSKMLKADP DFKYTVQVDD DSRIKNLMWT SGKSMDQYIC FGDVITFDTT YQTNLYDMPF  300
GLFVAVNNHF QSIILGGVLM RDEKVESFKW VFVEFMWMIG GKDRHPKAIL TDQARMEVAI  360
AEVLPNTKTV GASGMCSKRL *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g32951.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014753620.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_024313565.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A0Q3H2T0	0.0	A0A0Q3H2T0_BRADI; Uncharacterized protein
STRING	BRADI1G43906.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	4e-39	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Bradi1g32951.1.p
Entrez Gene	100828746