PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi1g32370.1.p | ||||||||
Common Name | BRADI_1g32370, LOC100845348 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 244aa MW: 27340.2 Da PI: 9.2739 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.2 | 2.4e-30 | 18 | 71 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+eLH++F+eave LGG+++AtPk+il+lm+vkg++++h+kSHLQ+YR+ Bradi1g32370.1.p 18 PRMRWTEELHRQFIEAVECLGGQDEATPKRILHLMGVKGISISHIKSHLQMYRS 71 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.967 | 14 | 74 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-28 | 14 | 73 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.08E-16 | 16 | 72 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.8E-25 | 18 | 71 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-9 | 19 | 70 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 244 aa Download sequence Send to blast |
MRGFERRGVR QYNRSDEPRM RWTEELHRQF IEAVECLGGQ DEATPKRILH LMGVKGISIS 60 HIKSHLQMYR SSSSNNSNSN SPANAFANRR QDHRHADDAY SRDWNKTAAT SDDKNRSTTP 120 YTFLRRGHQH SSPCRIPSIE EVFRNWEQSR GRVPCSSGVL ITTTEKAMGW PVRHAESKKR 180 QNQIMAAAGC DLTLSIGRWE EASSSDADGS STTTTEEAAV PPRGRPAGPD LNLDLTISSS 240 WLT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-16 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-16 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-16 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-16 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi1g32370.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CU406763 | 3e-67 | CU406763.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C005B16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003560440.1 | 0.0 | myb family transcription factor PHL11 | ||||
TrEMBL | I1GW23 | 0.0 | I1GW23_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G32370.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5493 | 37 | 58 | Representative plant | OGRP285 | 15 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G04580.1 | 2e-24 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi1g32370.1.p |
Entrez Gene | 100845348 |