PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g31700.4.p

Common Name

BRADI_1g31700

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 215aa MW: 23653.7 Da PI: 7.4135

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g31700.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.8	1.2e-13	52	101	6	55
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 r rr+ +NRe+ArrsR+RK a++ Le v++L++e +L k+l e +++ Bradi1g31700.4.p 52 RIRRMVSNRESARRSRRRKHAQLTDLELQVEQLKSESASLFKQLTEASQH 101 89*************************************99777776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.0E-12	47	111	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.185	49	100	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.17E-10	52	101	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.8E-11	52	101	No hit	No description
Pfam	PF00170	7.0E-11	52	101	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	54	69	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MSHLLYCFFI AASPRETTSG NQALESESES GSESLIDIEG GQCNRKSTDT MRIRRMVSNR 60 ESARRSRRRK HAQLTDLELQ VEQLKSESAS LFKQLTEASQ HFTSAVTDNR ILKSDVETLR 120 VKVKMAEDMV ARTAMSCNVG QLGSAPFLNS RKMCQALDML TATGLDLPGN HALFKDPTPA 180 RQVQTSTVQS TASLESLDNR MSSEVTSCAG DMWP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:22189955}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g31700.4.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by cold stress in roots. {ECO:0000269\|PubMed:22189955}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003563367.1	1e-146	bZIP transcription factor RISBZ5 isoform X2
Refseq	XP_010240308.1	1e-146	bZIP transcription factor RISBZ5 isoform X1
Swissprot	Q654B3	6e-73	RSBZ5_ORYSJ; bZIP transcription factor RISBZ5
TrEMBL	A0A0Q3H323	1e-157	A0A0Q3H323_BRADI; Uncharacterized protein
STRING	BRADI1G31700.1	1e-145	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	2e-27	basic leucine zipper 9

Link Out ? help Back to Top
Phytozome	Bradi1g31700.4.p

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Liu C,Wu Y,Wang X bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice. Planta, 2012. 235(6): p. 1157-69 [PMID:22189955]