PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g31337.1.p | ||||||||
Common Name | BRADI_1g31337, LOC100845569 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | AP2 | ||||||||
Protein Properties | Length: 467aa MW: 50911.6 Da PI: 6.2276 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.3 | 1e-14 | 128 | 187 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g Bradi1g31337.1.p 128 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 187 57*******************666664477446**********99*************98 PP | |||||||
2 | AP2 | 47.4 | 4.7e-15 | 230 | 281 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Bradi1g31337.1.p 230 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 281 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.8E-12 | 128 | 187 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-17 | 128 | 196 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.81E-20 | 128 | 197 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.0E-15 | 129 | 196 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-28 | 129 | 201 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.927 | 129 | 195 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-6 | 130 | 141 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.8E-10 | 230 | 281 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.00E-23 | 230 | 291 | No hit | No description |
SuperFamily | SSF54171 | 6.15E-18 | 230 | 291 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-18 | 231 | 290 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 231 | 289 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 231 | 295 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-6 | 271 | 291 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MDMDMSSTTH PHHWLSFSLS NNYHHGLLEA LSSSSSAHQL GDQEGTVDET PKMEDFLGGV 60 GSGAAGTTAV DQIGCGELGS IAAGFLHQYS APGMPENHGA VTVAAATTDL VESDQARRPA 120 ETFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQSRKG RQVYLGGYDK EDKAARAYDL 180 AALKYWGPTT TTNFPVTNYE TELEEMQSMT RQEFIASLRR KSSGFSRGAS IYRGVTRHHQ 240 HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVESILS 300 SDLPVGGGAA TRASKFQADP SLPPQNAGVV SPDMLPPLEK DYWSQLALHY QQQQQQQHQQ 360 QQQQHQQQFH ASAFQTYGSG VNVDFTMGTS SHSSSNGGAM WGATGQQDDG NRQSNSYSSD 420 IPYAAAAAMV SGSAAVYEGS TGNNGTWVTS NPSTAPQFYN YLFGME* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g31337.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101959 | 0.0 | AK101959.1 Oryza sativa Japonica Group cDNA clone:J033075O07, full insert sequence. | |||
GenBank | HQ858843 | 0.0 | HQ858843.1 Oryza sativa Japonica Group isolate UT1531 AP2-EREBP transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563348.3 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-130 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | I1GVQ3 | 0.0 | I1GVQ3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G31337.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-125 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g31337.1.p |
Entrez Gene | 100845569 |
Publications ? help Back to Top | |||
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