PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g30805.1.p
Common NameBRADI_1g30805
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARR-B
Protein Properties Length: 496aa    MW: 54125.2 Da    PI: 8.4465
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g30805.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like68.31.3e-21161213154
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                       kpr+ W+ eLH +Fv+av+++ G++kA Pk+i ++m+v+ +++  v+SHLQkY+
  Bradi1g30805.1.p 161 KPRVSWSVELHGQFVDAVNRI-GIDKAGPKKISDMMNVDHVSRGSVASHLQKYK 213
                       79*******************.*******************************7 PP
2Response_reg70.57.2e-24251301106
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       v+ vdD+++ +++l++ l+  +y +v++a++++eal++l+ek+  ++l+++D+ mp+mdG+ell++i+ e  +lp+ +  ++++ e++ + ++
  Bradi1g30805.1.p  25 VMAVDDDRVCLKILEVTLQMYKY-NVTTATNAKEALQMLREKKgwYELVITDLHMPEMDGIELLQQIKLEM-DLPCYLQMTNADRETVMKGVR 115
                       799********************.***************999999**********************9966.9******************** PP

                       TTESEEEESS--HHH CS
      Response_reg  92 aGakdflsKpfdpee 106
                       +Ga ++ +Kp++ +e
  Bradi1g30805.1.p 116 YGACEYTVKPWQHDE 130
                       **********98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.8E-3022154No hitNo description
SuperFamilySSF521722.28E-2722130IPR011006CheY-like superfamily
SMARTSM004484.8E-1923135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.38624139IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.2E-2025130IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.78E-2128130No hitNo description
PROSITE profilePS5129411.205158217IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-22159217IPR009057Homeodomain-like
SuperFamilySSF466892.51E-14159218IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-18161214IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MAALQLEKRR PTAATSEEWP VGMRVMAVDD DRVCLKILEV TLQMYKYNVT TATNAKEALQ  60
MLREKKGWYE LVITDLHMPE MDGIELLQQI KLEMDLPCYL QMTNADRETV MKGVRYGACE  120
YTVKPWQHDE QGAKSTRKNS RNKKNDEHHS LESKENDSTK KPRVSWSVEL HGQFVDAVNR  180
IGIDKAGPKK ISDMMNVDHV SRGSVASHLQ KYKRRLSKDP KSKPDNNDGL CHEAEIRKMS  240
NMELSEHSHE DRICLHPSSV VASSSSNNHF ASQQPIQPLG MGTVSPGGIM PNYPSASASA  300
GAGATGYGSY PKTLSDMLLE ANQRTASSHL GNPSARIPSS GQLFRPLNQF PVQPAAPVNH  360
SSALNMMNAP ATNLAAPLGV GDTSMFPGLA GNYNNTWQTL VPSQFPDLLR GDGTYAGPSQ  420
ANVTNINQLA SSGQIPMIQN EMQNLMAASN SNTSSSVVVS IRSNSNRFIS GSYLVLVGLG  480
VVQGNQRVGL LVVFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-16158218262ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g30805.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3H1J20.0A0A0Q3H1J2_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.11e-53response regulator 10